Pinned Repositories
render
Render transformed image tiles
bigdataviewer-core
ImgLib2-based viewer for registered SPIM stacks and more
CATMAID
Collaborative Annotation Toolkit for Massive Amounts of Image Data
de.flapdoodle.embed.mongo
...will provide a platform neutral way for running mongodb in unittests.
EM_aligner
A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.
EM_aligner_python
Python version of Khaled Khairy's EM_aligner, supporting distributed assembly and solve
fibsem-tools
Tools for handling FIB-SEM data and annotations
flintstone
Ingition for your spark jobs
jeiss-convert
Convert Jeiss .dat files to HDF5
jeiss-specs
Specifications of output format for "Jeiss" FIBSEMs
trautmane's Repositories
trautmane/bigdataviewer-core
ImgLib2-based viewer for registered SPIM stacks and more
trautmane/CATMAID
Collaborative Annotation Toolkit for Massive Amounts of Image Data
trautmane/de.flapdoodle.embed.mongo
...will provide a platform neutral way for running mongodb in unittests.
trautmane/EM_aligner
A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.
trautmane/EM_aligner_python
Python version of Khaled Khairy's EM_aligner, supporting distributed assembly and solve
trautmane/fibsem-tools
Tools for handling FIB-SEM data and annotations
trautmane/flintstone
Ingition for your spark jobs
trautmane/jeiss-convert
Convert Jeiss .dat files to HDF5
trautmane/jeiss-specs
Specifications of output format for "Jeiss" FIBSEMs
trautmane/n5-spark
Spark-driven processing utilities for N5 datasets.
trautmane/n5-utils
simple standalone BigDataViewer for multiple N5 (or HDF5) datasets
trautmane/n5toc
trautmane/render
Render transformed image tiles
trautmane/render-python
A python interface for render
trautmane/scijava-maven-plugin
A Maven plugin to manage development of SciJava-based software.
trautmane/spark-janelia
scripts for using spark on janelia's cluster
trautmane/SPIM_Registration
Deprecated, instead check out: https://github.com/preibischLab/multiview-reconstruction & https://github.com/PreibischLab/BigStitcher
trautmane/spimdata
representation of multi-angle, multi-channel (etc.) SPIM images and their registration
trautmane/TeslaPy
A Python module to use the Tesla Motors Owner API
trautmane/z-spacing
Estimate the correct positions of sections of three dimensional image data.