trberg
Research Scientist at Sage Bionetworks working on DREAM Challenges and clinical prediction model benchmarking.
Sage BionetworksSeattle, WA
Pinned Repositories
Achilles
Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
cafa-format-check
Format checkers for CAFA predictions files
challengeutils
Synapse challenge utility functions
deck.gl-data
Data for the data visualization library deck.gl examples (https://uber.github.io/deck.gl/#/)
DQe-c
DQe-c is a tool for examining completeness in clinical research data repositories.
DREAM-Challenge-Data-Curation
These are the scripts used to create the training and evaluation data for the EHR DREAM Challenges
DREAM-Challenge-Data-Curation-Validation
The data creation scripts for the validation phase of the DREAM Challenge
EHR-DREAM-Challenge-Patient-Mortality-Prediction
Repository for the code used to generate the results of the analysis of the EHR DREAM Challenge: Patient Mortality Prediction
FeTs-Validate-Users
Mutpred-Merge
trberg's Repositories
trberg/Achilles
Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
trberg/cafa-format-check
Format checkers for CAFA predictions files
trberg/challengeutils
Synapse challenge utility functions
trberg/deck.gl-data
Data for the data visualization library deck.gl examples (https://uber.github.io/deck.gl/#/)
trberg/DQe-c
DQe-c is a tool for examining completeness in clinical research data repositories.
trberg/DREAM-Challenge-Data-Curation
These are the scripts used to create the training and evaluation data for the EHR DREAM Challenges
trberg/DREAM-Challenge-Data-Curation-Validation
The data creation scripts for the validation phase of the DREAM Challenge
trberg/EHR-DREAM-Challenge-Patient-Mortality-Prediction
Repository for the code used to generate the results of the analysis of the EHR DREAM Challenge: Patient Mortality Prediction
trberg/FeTs-Validate-Users
trberg/Mutpred-Merge
trberg/ohdsi-contrib-docker
Docker images for OHDSI tools.
trberg/smart-on-fhir-tutorial
SMART on FHIR Tutorial for 2018 UW FHIR Workshop based on https://engineering.cerner.com/smart-on-fhir-tutorial/
trberg/MutPredPy
A suite of tools preparing, managing, and running jobs with the MutPred suite of pathogenic variant prediction tools.
trberg/Octopus
trberg/uts-rest-api
A repository of code samples in various languages that show how to use the UMLS Terminology Services REST API
trberg/UWThesis
Class file for University of Washington thesis formatting
trberg/VEDx_SNOMED
The Visual Exploration of Diagnosis Codes Dashboard