Coinstac Code for Single-Shot Regression (ssr) on FreeSurfer Data
In COINSTAC, you can select any of the following Regions of Interest as Dependent variables in the regression.
Left-Lateral-Ventricle Left-Inf-Lat-Vent Left-Cerebellum-White-Matter Left-Cerebellum-Cortex Left-Thalamus-Proper Left-Caudate Left-Putamen Left-Pallidum 3rd-Ventricle 4th-Ventricle Brain-Stem Left-Hippocampus Left-Amygdala CSF Left-Accumbens-area Left-VentralDC Left-vessel Left-choroid-plexus Right-Lateral-Ventricle Right-Inf-Lat-Vent Right-Cerebellum-White-Matter Right-Cerebellum-Cortex Right-Thalamus-Proper Right-Caudate Right-Putamen Right-Pallidum Right-Hippocampus Right-Amygdala Right-Accumbens-area Right-VentralDC Right-vessel Right-choroid-plexus 5th-Ventricle Optic-Chiasm CC_Posterior CC_Mid_Posterior CC_Central CC_Mid_Anterior CC_Anterior BrainSegVol BrainSegVolNotVent BrainSegVolNotVentSurf lhCortexVol rhCortexVol CortexVol lhCorticalWhiteMatterVol rhCorticalWhiteMatterVol CorticalWhiteMatterVol SubCortGrayVol TotalGrayVol SupraTentorialVol SupraTentorialVolNotVent SupraTentorialVolNotVentVox MaskVol BrainSegVol-to-eTIV MaskVol-to-eTIV lhSurfaceHoles rhSurfaceHoles SurfaceHoles EstimatedTotalIntraCranialVol
Tools: Python 3.6.5, coinstac-simulator 4.2.0
Steps
- sudo npm i -g coinstac-simulator@4.2.0
- git clone https://github.com/trendscenter/coinstac-ssr-fsl-2.git
- cd coinstac_ssr_fsl_2
- docker build -t ssr_fsl .
- coinstac-simulator