Pinned Repositories
arrayHowTo
A very simple walkthrough of DNA methylation microarray processing with SeSAMe and minfi.
biscuiteer
tools for analysing Biscuit (https://huishenlab.github.io/biscuit/) output
chromophobe
a package to handle ChromHMM (http://compbio.mit.edu/ChromHMM/) and similar segmentation models in R
compartmap
Chromatin compartment inference from ATACseq, RNAseq, and DNA methylation
cropcircle
metabolomics imputation, factorization, manipulation
MTseeker
mitochondrial variant analysis tools
rehash
idiotically simple translucent data sharing for Bioconductor data structures
spiky
trichelab.github.io
Organization site on github.io (supposedly)
velocessor
velocity processor
The Triche Lab's Repositories
trichelab/MToolBox
A bioinformatics pipeline to analyze mtDNA from NGS data
trichelab/bwa-aln-xeon-phi-0.5.10
bwa-aln-xeon-phi optimizes bwa aln performance on both Xeon and Xeon Phi platform, and support symmetric running model on Xeon and Xeon Phi hybrid nodes.
trichelab/indRop
An R package for basic indrop analyses and data handling
trichelab/mantis
Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
trichelab/mapscape
Visualization tool for spatial clonal evolution.
trichelab/MTB-Report
The user can generate Molecular Tumor Board reports for TCGA samples
trichelab/MutationTime.R
An R script to time somatic mutations
trichelab/phy-mer
phy-mer
trichelab/scATAC_Compartments
A/B compartments from single-cell ATAC seq (scATAC)
trichelab/single-cell-3prime-paper
trichelab/squeakr
Squeakr: An Exact and Approximate k -mer Counting System
trichelab/stereogene
trichelab/timescape
Visualization tool for temporal clonal evolution.