trickovicmatija
PhD Student, Genomics and Digital Health
CMU, Faculty of Medicine, UNIGEGeneve, Switzerland
Pinned Repositories
atlas
ATLAS - Three commands to start analyzing your metagenome data
HumanMetadata
Quality-filtering
ALDEx2-python
Run popular ALDEx2 tool from Python.
assign-MAGs
kingfisher_workflow
This is a workflow that allows you to download whole projects and metadata with kingfisher. Additionally, it takes care about merging same samples together.
SMA
This repository contains files needed to locally run model for SALSA MC002 SMA Newborn Screen Assay automatic results interpretation.
use_catalog
Use specific sourmash index to quantify bacterial taxa from metagenomic samples
trickovicmatija's Repositories
trickovicmatija/ALDEx2-python
Run popular ALDEx2 tool from Python.
trickovicmatija/assign-MAGs
trickovicmatija/kingfisher_workflow
This is a workflow that allows you to download whole projects and metadata with kingfisher. Additionally, it takes care about merging same samples together.
trickovicmatija/SMA
This repository contains files needed to locally run model for SALSA MC002 SMA Newborn Screen Assay automatic results interpretation.
trickovicmatija/use_catalog
Use specific sourmash index to quantify bacterial taxa from metagenomic samples