Updates to Chado\Storage
Closed this issue · 1 comments
shawnawsu commented
Please tag all tickets and pr's with group 2 to denote it relates to this group of updates.
Files this update will require to be reviewed and updated (in order):
- Tripal Chado Module
- Convert tripal_chado.info to tripal_chado.yml
- tripal_chado.module
- Convert hook_menu and forms
- Convert D7 variables to D8 Config
- Convert D7 variables to D8’s state system
- tripal_chado.install
- includes
- api
- ChadoRecord.inc
- ChadoSchema.inc
- generate_chado_schema_file.php
- Modules
- tripal_chado.analysis.api.inc
- tripal_chado.contact.api.inc
- tripal_chado.cv.api.inc
- tripal_chado.db.api.inc
- tripal_chado.feature.api.inc
- tripal_chado.organism.api.inc
- tripal_chado.phylotree.api.inc
- tripal_chado.project.api.inc
- tripal_chado.pub.api.inc
- tripal_chado.stock.api.inc
- tripal_chado.api.inc
- tripal_chado.custom_tables.api.inc
- tripal_chado.entity.api.inc
- tripal_chado.migrate.api.inc
- tripal_chado.mviews.api.inc
- tripal_chado.property.api.inc
- tripal_chado.query.api.inc
- tripal_chado.schema_v1.2.api.inc
- tripal_chado.schema_v1.3.api.inc
- tripal_chado.schema_v1.11.api.inc
- tripal_chado.schema.api.inc
- tripal_chado.semweb.api.inc
- tripal_chado.variables.api.inc
- ChadoDatabaseConnection.inc
- setup
- tripal_chado.chado_v1_1.inc
- tripal_chado.chado_v1.2.inc
- tripal_chado.chado_vx_x.inc
- Tripal_chado.setup.inc
- tripal_chado.bundle.inc
- tripal_chado.custom_tables.inc
- tripal_chado.cv.inc
- tripal_chado.db.inc
- tripal_chado.entity.inc
- tripal_chado.field_storage.inc
- tripal_chado.fields.inc
- tripal_chado.install.inc
- tripal_chado.mapping.inc
- tripal_chado.migrate.inc
- tripal_chado.mviews.inc
- tripal_chado.phylotree.inc
- tripal_chado.pub_search.inc
- tripal_chado.publish.inc
- tripal_chado.schema.inc
- tripal_chado.semweb.inc
- tripal_chado.seq_extract.inc
- Tripal_chado.vocab_storage.inc
- api
- tripalfields
- chadofield.inc
- chadofieldformatter.inc
- chadofieldwidget.inc
- chado_linker__contact
- chado_linker__contact_formatter.inc
- chado_linker__contact_widget.inc
- Chado_linker__contact.inc
- Chado_linker__prop
- chado_linker__prop_formatter.inc
- chado_linker__prop_widget.inc
- chado_linker__prop.inc
- data__accession
- data__accession_formatter.inc
- data__accession_widget.inc
- Data__accession.inc
- data__protein_sequence
- data__protein_sequence_formatter.inc
- data__protein_sequence_widget.inc
- Data__protein_sequence.inc
- data__sequence
- data__sequence_formatter.inc
- data__sequence_widget.inc
- Data__sequence.inc
- data__sequence_checksum
- data__sequence_checksum_formatter.inc
- data__sequence_checksum_widget.inc
- Data__sequence_checksum.inc
- Data__sequence_coordinates
- data__sequence_coordinates_formatter.inc
- data__sequence_coordinates_widget.inc
- data__sequence_coordinates.inc
- Data__sequence_coordinates_table
- data__sequence_coordinates_table_formatter.inc
- data__sequence_length
- data__sequence_length_formatter.inc
- data__sequence_length_widget.inc
- Data__sequence_length.inc
- efo__array_design
- efo__array_design_formatter.inc
- efo__array_design_widget.inc
- Efo__array_design.inc
- Go__gene_expression
- go__gene_expression_formatter.inc
- go__gene_expression_widget.inc
- go__gene_expression.inc
- Local__contact
- local__contact_formatter.inc
- local__contact_widget.inc
- local__contact.inc
- Local__source_data
- local__source_data_formatter.inc
- local__source_data_widget.inc
- local__source_data.inc
- Obi__organism
- obi__organism_formatter.inc
- obi__organism_widget.inc
- obi__organism.inc
- Ogi__location_on_map
- ogi__location_on_map_formatter.inc
- ogi__location_on_map_widget.inc
- ogi__location_on_map.inc
- Operation__analysis
- operation__analysis_formatter.inc
- operation__analysis_widget.inc
- operation__analysis.inc
- operation__phylotree_vis
- operation__phylotree_vis_formatter.inc
- operation__phylotree_vis_widget.inc
- Operation__phylotree_vis.inc
- Sbo__database_cross_reference
- sbo__database_cross_reference_formatter.inc
- sbo__database_cross_reference_widget.inc
- sbo__database_cross_reference.inc
- Sbo__phenotype
- sbo__phenotype_formatter.inc
- sbo__phenotype_widget.inc
- sbo__phenotype.inc
- sbo__relationship
- sbo__relationship_formatter.inc
- sbo__relationship_widget.inc
- sbo__relationship.inc
- sbo__relationship_table
- sbo__relationship_table_formatter.inc
- schema__additional_type
- schema__additional_type_formatter.inc
- schema__additional_type_widget.inc
- schema__additional_type.inc
- schema__alternate_name
- schema__alternate_name_formatter.inc
- schema__alternate_name_widget.inc
- schema__alternate_name.inc
- schema__publication
- schema__publication_formatter.inc
- schema__publication_widget.inc
- schema__publication.inc
- sep__protocol
- sep__protocol_formatter.inc
- sep__protocol_widget.inc
- Sep__protocol.inc
- sio__annotation
- sio__annotation_formatter.inc
- sio__annotation_widget.inc
- Sio__annotation.inc
- Sio__references
- sio__references_formatter.inc
- sio__references_widget.inc
- sio__references.inc
- sio__vocabulary
- sio__vocabulary_formatter.inc
- sio__vocabulary_widget.inc
- Sio__vocabulary.inc
- so__cds
- so__cds_formatter.inc
- so__cds_widget.inc
- So__cds.inc
- So__genotype
- so__genotype_formatter.inc
- so__genotype_widget.inc
- so__genotype.inc
- so__transcript
- so__transcript_formatter.inc
- so__transcript_widget.inc
- So__transcript.inc
- taxrank__infraspecific_taxon
- taxrank__infraspecific_taxon_formatter.inc
- taxrank__infraspecific_taxon_widget.inc
- Taxrank__infraspecific_taxon.inc
- uo__unit
- uo__unit_formatter.inc
- uo__unit_widget.inc
- uo__unit.inc
- Convert tripal_chado.info to tripal_chado.yml
laceysanderson commented
Closing these roadmap issues as we arn't currently using this approach to focus the upgrade.
This is part of an attempt to minimize the number of issues in this repo in preparation for moving back to the core tripal/tripal repo.