Tripal
An open-source toolkit for construction of genomic, genetic, breeding and biological databases.
Pinned Repositories
test-tripal-action
Provides a Github Action to make automated testing workflows for Tripal Extension modules easy!
tripal
The Tripal package is a suite of Drupal modules for creating biological (genomic, genetic, breeding) websites. Visit the Tripal homepage at http://tripal.info for documentation, support, and other information. The Drupal project page is at http://drupal.org/project/tripal.
tripal_analysis_expression
Extension module for the Tripal toolset to show differential expression data. This module was made for Drupal 7, Tripal 3, and Chado 1.3.
tripal_blast
Provides an user interface to BLAST on Tripal sites.
tripal_devtools
Provides tools to make development of Tripal extension modules easier!
tripal_doc
Official Documentation for the Tripal Platform
tripal_elasticsearch
tripal_jbrowse
Drupal/Tripal: Drupal integration for GMOD JBrowse instances.
tripal_synview
synteny viewer
TripalTestSuite
Handle drupal bootstrapping, load environment variables, and easily wrap your tests in DB transactions.
Tripal's Repositories
tripal/tripal
The Tripal package is a suite of Drupal modules for creating biological (genomic, genetic, breeding) websites. Visit the Tripal homepage at http://tripal.info for documentation, support, and other information. The Drupal project page is at http://drupal.org/project/tripal.
tripal/tripal_jbrowse
Drupal/Tripal: Drupal integration for GMOD JBrowse instances.
tripal/tripal_blast
Provides an user interface to BLAST on Tripal sites.
tripal/tripal_elasticsearch
tripal/tripal_analysis_expression
Extension module for the Tripal toolset to show differential expression data. This module was made for Drupal 7, Tripal 3, and Chado 1.3.
tripal/tripal_install
Tripal Install Profiles
tripal/tripal_remote_job
A Tripal module, Tripal Remote Job can be used to launch jobs on external/remote servers to avoid overloading the webserver.
tripal/tripald3
provides an API for developing consistent biological diagrams with a common configuration, as well as, providing some common diagrams such as pie, bar, column and pedigree diagrams.
tripal/TripalTestSuite
Handle drupal bootstrapping, load environment variables, and easily wrap your tests in DB transactions.
tripal/mainlab_tripal
Mainlab Tripal Data Display: extending the display of a Tripal database
tripal/tripal_analysis_blast
This module extends the Tripal Analysis Module and provides a method for loading XML results from the NCBI blast program. Blast results appear on each feature page.
tripal/tripal_doc
Official Documentation for the Tripal Platform
tripal/tripal_galaxy
This module is for integration of Tripal and a remote Galaxy Instance.
tripal/tripal_sequence_similarity_search
This module supports sequence similarity search on a Tripal website through a new dual application option. The Tripal module provides access to the speed increase available through Diamond for BLASTP/BLASTX style searches as well as traditional NCBI BLAST for BLASTN. Both applications are integrated into a single interface that provides file upload or copy/paste sequence support for the query and access to formatted databases for NCBI BLAST or Diamond. The target databases can be customized for the categories of whole genome, gene, protein, and transcriptome/unigene. The administration interface allows the admin user to set what pre-indexed databases are available (which show up in a dropdown menu). The module supports execution of the searches on a remote machine so that the search is not running directly on the limited resources typically associated with web servers.
tripal/trpdownload_api
An API for implementing download functionality.
tripal/fields_generator
A composer tool for easily generating Tripal Fields
tripal/private_biodata
Make individual pages private while others of the same Tripal Content Type remain public!
tripal/t4d8
This is a temporary repository for Drupal 9 upgrade for Tripal v4. It is meant to house issues related to the upgrade.
tripal/tripal_analysis_interpro
This module extends the Tripal Analysis Module and provides a method for loading XML results from the InterProScan program. The module can load InterProScan XML v4 or InterProScan XML v5 generated from the command-line or web-based versions of InterProScan. Additionally, GO terms mapped by InterProScan can optionally be assigned to features.
tripal/tripal_file
Manages site-wide files and associates them with content in a Tripal site.
tripal/tripal_genetic
Extends core Tripal with support focused on genotypic data, genetic markers, sequence variants, etc.
tripal/tripal_network
Provides Tripal integration of biological networks including storage, loaders and visualzations
tripal/trpfancy_fields
Provide additional fields to jazz up your Tripal Content Pages!
tripal/test-tripal-action
Provides a Github Action to make automated testing workflows for Tripal Extension modules easy!
tripal/tripal_devtools
Provides tools to make development of Tripal extension modules easier!
tripal/brapi
Breeding API client-server implementation (v1 & v2) for Tripal
tripal/chado_linker_fields
Tripal fields to display content linked to a different content type through linker tables
tripal/setup-tripal-action
Provides a GitHub Action to setup a basic Tripal site in your GitHub Action Workflows.
tripal/Tripal-JBrowse-InternetAccountPlugin
Provides a JBrowse plugin that uses the Drupal 8+ REST API to confirm a Drupal user is logged in.
tripal/tripal_design
Design Documentation for Tripal in markdown