Tripal
An open-source toolkit for construction of genomic, genetic, breeding and biological databases.
Pinned Repositories
test-tripal-action
Provides a Github Action to make automated testing workflows for Tripal Extension modules easy!
tripal
The Tripal package is a suite of Drupal modules for creating biological (genomic, genetic, breeding) websites. Visit the Tripal homepage at http://tripal.info for documentation, support, and other information. The Drupal project page is at http://drupal.org/project/tripal.
tripal_analysis_expression
Extension module for the Tripal toolset to show differential expression data. This module was made for Drupal 7, Tripal 3, and Chado 1.3.
tripal_blast
Provides an user interface to BLAST on Tripal sites.
tripal_devtools
Provides tools to make development of Tripal extension modules easier!
tripal_doc
Official Documentation for the Tripal Platform
tripal_elasticsearch
tripal_jbrowse
Drupal/Tripal: Drupal integration for GMOD JBrowse instances.
tripal_synview
synteny viewer
TripalTestSuite
Handle drupal bootstrapping, load environment variables, and easily wrap your tests in DB transactions.
Tripal's Repositories
tripal/tripal_synview
synteny viewer
tripal/chado_search
Mainlab Chado Search: enabling advanced search function for a Tripal/Chado database
tripal/mainlab_chado_loader
Mainlab Chado Loader
tripal/mainlab_tripal
Mainlab Tripal Data Display: extending the display of a Tripal database
tripal/tripal_analysis_kegg
This module extends the Tripal Analysis Module and provides a method for loading of KEGG ortholog assignments derived from the KEGG Automated Annotation Server (KAAS). The module reads the compressed .heir file or alternatively an expanded heir directory. KEGG assignments appear on each feature page, and a full KEGG report is available for browsing results once uploaded.
tripal/tripal_bam_store
Provides a field storage implementation for BAM files.
tripal/tripal_go
go enrichment for tripal
tripal/docker-tripal-centos
Docker container for Tripal 2 and Tripal 3
tripal/Tripal4_services_proof-of-concept
Experimental code for a services-driven approach to Tripal 4
tripal/tripal_analysis_go
This module is responsible for displaying reports from Gene Ontology (GO) analyses. This module contains a Gene Ontology Annotation Format (GAF) file loader to import GO terms assigned to features. Otherwise, GO assignments must already be loaded into the Tripal database using other data loaders (e.g. using the Tripal InterPro Analysis module or a GFF file)
tripal/tripal_pathway
pathway enrichment analysis
tripal/tripal_simpletest
This module can be used to develop functional tests on Tripal extensions that can be run on an existing site without disturbing its content. It's compatible with Drupal native test system.
tripal/tripal_analysis_unigene
DEPRECATED. This module is no longer needed for Tripal v3. Only major bug fixes will be considered for Tripal v2 sites that still use it. But, in summary, This module extends the Tripal v2 Analysis Module and provides visualization of Unigenes derived from ESTs.
tripal/tripal_dt
An example module released during PAG 2017 hackathon, that displays a D3JS tree from the phylonode table.
tripal/tripal_scidas
Integration of Tripal with the SciDAS Nextflow API