tripal/tripal_sequence_similarity_search
This module supports sequence similarity search on a Tripal website through a new dual application option. The Tripal module provides access to the speed increase available through Diamond for BLASTP/BLASTX style searches as well as traditional NCBI BLAST for BLASTN. Both applications are integrated into a single interface that provides file upload or copy/paste sequence support for the query and access to formatted databases for NCBI BLAST or Diamond. The target databases can be customized for the categories of whole genome, gene, protein, and transcriptome/unigene. The administration interface allows the admin user to set what pre-indexed databases are available (which show up in a dropdown menu). The module supports execution of the searches on a remote machine so that the search is not running directly on the limited resources typically associated with web servers.
PHPNOASSERTION
Issues
- 0
Module Drupal 9+ Upgrade
#35 opened by Ferrisx4 - 0
Forms should not translate values
#34 opened by Ferrisx4 - 1
Incorrect link back to databases
#33 opened by Ferrisx4 - 0
Remove site-specific references
#32 opened by Ferrisx4 - 0
Submission form changes
#30 opened by Ferrisx4 - 0
Export/Import DB List Updates
#29 opened by Ferrisx4 - 0
tseq_validate_sequence()
#26 opened by Ferrisx4 - 0
Webserver Permissions ignored
#13 opened by Ferrisx4 - 0
Error false positives
#15 opened by Ferrisx4 - 1
file checking
#10 opened by Ferrisx4 - 1
Bug: permission denied when accessing file
#23 opened by Ferrisx4 - 0
Previously uploaded files
#9 opened by Ferrisx4 - 1
Feature Request - Import/Export DB list
#7 opened by Ferrisx4 - 2
- 1
Results Formatting
#16 opened by Ferrisx4 - 0
Database list changes affect results pages
#19 opened by Ferrisx4 - 0
Config Potemkin Village
#12 opened by Ferrisx4 - 0
tseq_submit_form_submit - Refactor needed
#17 opened by Ferrisx4 - 0
TSeq Version Compatibility
#14 opened by Ferrisx4 - 1
File Checking is too strict
#6 opened by Ferrisx4 - 0
Four Spaces prepended to EVERY page
#8 opened by Ferrisx4 - 1
Permissions are too lax
#2 opened by Ferrisx4