Updates to Data Importing
Closed this issue · 3 comments
shawnawsu commented
Please tag all tickets and pr's with group 4 to denote it relates to this group of updates.
Files this update will require to be reviewed and updated (in order):
- Tripal Bulk Loader Module
- Convert tripal_bulk_loader.info to tripal_bulk_loader.yml
- tripal_bulk_loader.module
- Convert hook_menu and forms
- Convert D7 variables to D8 Config
- Convert D7 variables to D8’s state system
- api
- tripal_bulk_loader.api.templates.inc
- tripal_bulk_loader.DEPRECATED.inc
- includes
- tripal_bulk_loader.admin.inc
- tripal_bulk_loader.admin.templates.inc
- tripal_bulk_loader.chado_node.inc
- tripal_bulk_loader.constants.inc
- Tripal_bulk_loader.loader.inc
- Convert tripal_bulk_loader.info to tripal_bulk_loader.yml
- Tripal Module
- includes
- tripal.importer.inc
- TripalImporter.inc
- tripal.upload.inc
- api
- tripal.importer.api.inc
- tripal.upload.api.inc
- includes
- Tripal Chado Module
- includes
- Tripalimporter
- FASTAImporter.inc
- GFF3Importer.inc
- NewickImporter.inc
- OBOImporter.inc
- PubBulkImporter.inc
- TaxonomyImporter.inc
- Exporters
- tripal_chado.gff_exporter.inc
- tripal_chado.seq_extract.inc
- loaders
- OWLStanza.inc
- tripal_chado.phylotree_newick.inc
- tripal_chado.pub_importer_AGL.inc
- tripal_chado.pub_importer_PMID.inc
- tripal_chado.pub_importers.inc
- Tripal_cv.owl_loader.php
- Tripalimporter
- includes
par12005 commented
I updated includes/tripal.upload.inc and api/tripal.upload.api.inc, now combined into tripal/api/tripal.upload.api.php, in PR #44, since the upload API needed to be upgraded in order for the HTML5 file upload field to function properly.
spficklin commented
Should we move the Tripal bulk loader outside of Core Tripal and make it an extension module?
laceysanderson commented
Closing these roadmap issues as we arn't currently using this approach to focus the upgrade.
This is part of an attempt to minimize the number of issues in this repo in preparation for moving back to the core tripal/tripal repo.