tropicco

tropicco's Stars

• MaxRobinsonTheGreat/LifeEngine

  The Life Engine

  Language:JavaScript456113

• RamanLab/picCASO

  picCASO is a MATLAB package to simulate the dynamics of spatial patterning of a microbial consortium on a 2-dimensional surface.

  Language:MATLAB2

• ammaraziz/assembly-stats

  Assembly statistic visualisation

  Language:JavaScript258

• Chakazul/Lenia

  Lenia - Mathematical Life Forms

  Language:Python3.5k223

• itsmeludo/PhylOligo

  Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.

  Language:Python102

• bcgsc/abyss

  :microscope: Assemble large genomes using short reads

  Language:C++312108

• chrishah/MITObim

  MITObim - mitochondrial baiting and iterative mapping

  Language:Perl11034

• loneknightpy/idba

  Language:C++12553

• GATB/minia

  Minia is a short-read assembler based on a de Bruijn graph

  Language:C++7214

• dzerbino/velvet

  Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18: 821-829

  Language:C283100

• Kinggerm/GetOrganelle

  Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)

  Language:Python28054

• josephryan/estimate_genome_size.pl

  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish

  Language:Perl5620

• matted-zz/genome_coverage_plotter

  Simple script to generate whole-genome coverage plots

  Language:Python1812

• raymondkiu/fastq-info

  Calculate fastq reads and sequencing coverage

  Language:Shell141

• lh3/seqtk

  Toolkit for processing sequences in FASTA/Q formats

  Language:C1.4k307

• ncbi/fcs

  Foreign Contamination Screening caller scripts and documentation

  10814

• ebp-nor/genome-assembly-workshop-2023

  64

• Gaius-Augustus/Augustus

  Genome annotation with AUGUSTUS

  Language:C++290110

• Benson-Genomics-Lab/TRF

  Tandem Repeats Finder: a program to analyze DNA sequences

  Language:C15526

• ossu/bioinformatics

  :microscope: Path to a free self-taught education in Bioinformatics!

  5.5k929

• rjchallis/assembly-stats

  Assembly statistic visualisation

  Language:JavaScript8885

• Gabaldonlab/redundans

  Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

  Language:C++13220

• deeptools/deepTools

  Tools to process and analyze deep sequencing data.

  Language:Python685213

• mdshw5/fastqp

  Simple FASTQ quality assessment using Python

  Language:Python10914

• mptrsen/Orthograph

  Orthology prediction using a graph-based, reciprocal approach with profile hidden Markov models

  Language:Perl325

• ablab/spades

  SPAdes Genome Assembler

  Language:C++763138

• conda/conda

  A system-level, binary package and environment manager running on all major operating systems and platforms.

  Language:Python6.5k1.7k

• smirarab/ASTRAL

  Accurate Species TRee ALgorithm

  Language:Java24769

• galaxyproject/galaxy-upload

  Galaxy Upload Utility for the CLI

  Language:Python81

• ropensci/targets

  Function-oriented Make-like declarative workflows for R

  Language:R94474