Pinned Repositories
Bpod_Gen2
Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
datajoint-tutorials
Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples
emmynoether_template
Template for DFG Emmy Noether Proposals
FreelyMovingEphys
Preprocessing and analysis for electrophysiology experiments in freely moving mice.
immoscraper
Immoscout24.de scraper and data analytics
joy
Generates a joyplot movie.
LGN_Analysis
LGN electrophysiological analysis scripts; SCRIPTS AND FUNCTIONS ARE INITIATED BY Analysis_mini_ramp; EXCEL SHEET IS NEEDED
matlab
MATLAB Tools - Various useful functions we've put together for convenience
trose-neuro's Repositories
trose-neuro/Bpod_Gen2
Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)
trose-neuro/CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
trose-neuro/datajoint-tutorials
Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples
trose-neuro/emmynoether_template
Template for DFG Emmy Noether Proposals
trose-neuro/FreelyMovingEphys
Preprocessing and analysis for electrophysiology experiments in freely moving mice.
trose-neuro/immoscraper
Immoscout24.de scraper and data analytics
trose-neuro/joy
Generates a joyplot movie.
trose-neuro/LGN_Analysis
LGN electrophysiological analysis scripts; SCRIPTS AND FUNCTIONS ARE INITIATED BY Analysis_mini_ramp; EXCEL SHEET IS NEEDED
trose-neuro/matlab
MATLAB Tools - Various useful functions we've put together for convenience
trose-neuro/mini2p1_AUX---bonsai
trose-neuro/Neural_Decoding
A python package that includes many methods for decoding neural activity
trose-neuro/Point_Grey_Bonsai_multi_camera_acquisition
Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.
trose-neuro/psc-detection-dist
Distribution of code implementing the Bayesian PSC detection algorithm described in Merel et al, J. Neuro. Meths., 2016.
trose-neuro/rspace-client-python
Python SDK and examples for the RSpace API
trose-neuro/ScanImageTools
MATLAB tools for running imaging experiments with ScanImage
trose-neuro/sci-viz-demo
A demonstration of SciViz's latest features included as part of the pipeline visualization framework.
trose-neuro/stimfit-helpers
trose-neuro/suite2p
cell detection in calcium imaging recordings