Pinned Repositories
getting-started-python-jupyter
This notebook takes one 16S sample from an Illumina MiSeq run, runs it through Kraken 2 on Toolchest, and plots a rough sketch of the microbial composition of the sample.
kraken2
The second version of the Kraken taxonomic sequence classification system
lug
Run Python functions locally or in the cloud. Built for computational science.
performance-tests
Pipelines that test the performance of FlowDeploy
pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
snakemake-tutorial
A Snakemake workflow based on the official short tutorial: https://snakemake.readthedocs.io/en/v7.32.3/tutorial/short.html
toolchest-client-python
Toolchest Python client
toolchest-client-r
R Client for Toolchest
Unicycler
hybrid assembly pipeline for bacterial genomes
trytoolchest's Repositories
trytoolchest/lug
Run Python functions locally or in the cloud. Built for computational science.
trytoolchest/toolchest-client-python
Toolchest Python client
trytoolchest/getting-started-python-jupyter
This notebook takes one 16S sample from an Illumina MiSeq run, runs it through Kraken 2 on Toolchest, and plots a rough sketch of the microbial composition of the sample.
trytoolchest/snakemake-tutorial
A Snakemake workflow based on the official short tutorial: https://snakemake.readthedocs.io/en/v7.32.3/tutorial/short.html
trytoolchest/toolchest-client-r
R Client for Toolchest
trytoolchest/kraken2
The second version of the Kraken taxonomic sequence classification system
trytoolchest/performance-tests
Pipelines that test the performance of FlowDeploy
trytoolchest/pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
trytoolchest/Unicycler
hybrid assembly pipeline for bacterial genomes