tstoeger/enrichment_tool

Building a functional enrichment tool during BDSD

Jupyter Notebook

enrichment_tool

Tutorial on building a custom functional enrichment tool during Biomedical Data Science Day 2020

Files

example_plain: scaffold to start writing the enrichment_tool
example_complete: full code (a final solution)
handout: overview

Datasets used in tutorial

Gene Ontology annotations: https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz
Gene list: https://github.com/maggiecrow/DEprior/blob/master/DE_Prior.txt
EBI GWAS: https://www.ebi.ac.uk/gwas/api/search/downloads/full
Human Gene Info: https://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz