Pinned Repositories
EvalSVcallers
Evaluate the performances (precision and recall) of structural variation (SV) callers
flappie
Flip-flop basecaller for Oxford Nanopore reads
Mako
A model-free method for structural variants discovery
mako_classifier
mulRocPlayer
A tool to plot ROC curve in multi-class classification models.
nanosv
SV caller for nanopore data
ngmlr
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
pindel
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
srcfind
A tool to detect relative regions in genomes and give a score
ttbond's Repositories
ttbond/srcfind
A tool to detect relative regions in genomes and give a score
ttbond/EvalSVcallers
Evaluate the performances (precision and recall) of structural variation (SV) callers
ttbond/flappie
Flip-flop basecaller for Oxford Nanopore reads
ttbond/Mako
A model-free method for structural variants discovery
ttbond/mako_classifier
ttbond/mulRocPlayer
A tool to plot ROC curve in multi-class classification models.
ttbond/nanosv
SV caller for nanopore data
ttbond/ngmlr
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
ttbond/pindel
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
ttbond/pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
ttbond/scikit-geometry
Scientific Python Geometric Algorithms Library
ttbond/Special-skills-in-linux
To record some special but useful command format in linux
ttbond/Study-on-Three-generation-Sequencing-Structure-Variation-Detection-Algorithm-Graduation-Porject-
The relative files of ttbond's graduation project
ttbond/SV-detection-with-SSL-from-JD