R codes accompanying paper cdev: A ground-truth based measure to evaluate RNA-seq normalization performance
R notebooks:
- examine-real-datasets.Rmd: To examine the behavior of spike-ins in various RNA-seq data sets, and collect usable data sets into a single file
- cdev-upstream-downstream.Rmd: cdev in relation to upstream processing quality and downstream performance, i.e. DE analysis
- cdev-real-data.Rmd: behavior of cdev in real data sets
- cdev-application.Rmd: application of cdev to compare common normalization methods on simulation and real data
R scripts: