gbnorm - A graph-based algorithm for RNA-seq data normalization

Citation:

Tran DT, Bhaskara A, Kuberan B, Might M (2020) A graph-based algorithm for RNA-seq data normalization. PLOS ONE 15(1): e0227760. https://doi.org/10.1371/journal.pone.0227760

Notes

Release v0.99.1 is the first working snapshot of gbnorm. This version was used in the paper https://doi.org/10.1371/journal.pone.0227760. In this implementation, all the functions taking expression matrix as an input assume that it is samples (rows) x features (columns).
Release v0.99.2 made changes to the normalize.___() functions that take expression matrix as an input. The input matrix should now be features (rows) x samples (columns).

GNU GPLv3