turbomam/biosample-basex

fencepost errors in chunk_harmonized_attributes_long.xq

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turbomam commented

one has to be gte or lte

where xs:integer(
  $bs_id_val
) > $min_bs_id_val
and xs:integer(
  $bs_id_val
) < $max_bs_id_val
turbomam commented

OK. Now implemented with Makefile rules

  • target/biosample_set_under_$(del_from)_noclose.xml
  • target/biosample_set_over_$(del_from)_noopen.xml

Note that this splits the XML BioSample file in half. At some point each of the two halves will be too large for individual BaseX databases. See also #14