turbomam/biosample-basex
Using the Base-X XML database to discover structure in NCBI's Biosample database
Jupyter Notebook
Issues
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- 1
Are triple pipe ||| delimiters justified?
#8 opened by turbomam - 0
are there any column that are really numerical?
#35 opened by turbomam - 0
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zip reports from ha_highlights.py
#28 opened by turbomam - 1
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Rename SQLite tables?
#12 opened by turbomam - 0
Rename SQLite database file?
#11 opened by turbomam - 0
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rename the python script that claims to concatenate but currently writes the wides to SQLite
#3 opened by turbomam - 0
samples with missing Bioproject ids
#41 opened by realmarcin - 0
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add a units table like the wide repaired?
#33 opened by turbomam - 0
get exp types and descriptions from BioProject
#31 opened by turbomam - 4
Biosample fields to summarize for Montana
#25 opened by turbomam - 0
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cori requires module load python
#23 opened by turbomam - 9
util/extract_harmonizeds.py: TypeError: 'NoneType' object cannot be interpreted as an integer
#29 opened by turbomam - 1
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Write README or other documentation
#26 opened by turbomam - 2
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Add normalized 'env_package's to SQLite?
#10 opened by turbomam - 2
use .env for Makefile parameters
#17 opened by turbomam - 1
write directly to SQLite
#19 opened by turbomam - 2
switch to $d deletion for biosample_set_under
#18 opened by turbomam - 0
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distinguish raw id from "BIOSAMPLE:" + id
#2 opened by turbomam - 5