turbomam
Software Developer at the Lawrence Berkeley National Laboratory. Harmonizing biomedical semantics and metadata. Microbiomes, samples, multi-omics, syn. bio.
Lawrence Berkeley National LaboratoryPhiladelphia, PA, USA
turbomam's Stars
microbiomedata/SRA_submit
ncbi export
INCATools/relation-graph
Materialize OWL existential relations
monarch-initiative/uri-expression-language
hrshdhgd/oakx-oger
OGER plugin for oaklib.
microbiomedata/metadata_converter
Conversion of schemas/templates/metadata to biolinkml
zazuko/rdf-sketch
Sketch RDF in the web browser with immediate visualization
microbiomedata/nmdc-schema
National Microbiome Data Collaborative (NMDC) unified data model
linkml/linkml-map
Mapping between LinkML schemas
linkml/schemasheets
Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats
linkml/linkml-project-template
A template for LinkML projects using poetry and gen-project
linkml/linkml-model
Link Modeling Language (LinkML) model
linkml/linkml
Linked Open Data Modeling Language
linkml/schema-automator
Automated assistance for the schema development lifecycle
geneontology/go-ontology
Source ontology files for the Gene Ontology
PROconsortium/PRoteinOntology
bio-ontology-research-group/unit-ontology
An ontology of units of measurements
EnvironmentOntology/environmental-exposure-ontology
Modular environmental exposures ontology
obi-ontology/obi
The Ontology for Biomedical Investigations
pato-ontology/pato
PATO - the Phenotype And Trait Ontology
INCATools/ontology-development-kit
Bootstrap an OBO Library ontology
ontodev/robot
ROBOT is an OBO Tool
EnvironmentOntology/envo
A community-driven ontology for the representation of environments
sustrik/uxy
UXY: Adding structure to the UNIX tools