Part of final project in JCE.
The project's focus is on speeding up the Burrow-Wheeler Aligner for pairwise alignment between DNA sequences, and heavily depends on the BWA project.
The plan is to analyse the code, and implement it using paraleling on grphical cards and cuda.
Project Calendar is available here (Sign in is required).
List of issues are available here.
The MAN of the function we will be optimizing is available here
Then MAN of the BWA program is available here