Pinned Repositories
bedtools2
A powerful toolset for genome arithmetic.
bwa
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
ContaVect
Complete suite to analyse DNA contaminants of virus/vector preparation from NGS data
data-science-live-book
An open source book to learn data science, data analysis and machine learning, suitable for all ages!
Duplex-Sequencing
gepard
Genome Pair Rapid Dotter
googleCharts
Google Charts bindings for the Shiny web framework for R
hdbscan
A high performance implementation of HDBSCAN clustering. http://hdbscan.readthedocs.io/en/latest/
OncoTree
pindel
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
turningA's Repositories
turningA/bedtools2
A powerful toolset for genome arithmetic.
turningA/bwa
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
turningA/ContaVect
Complete suite to analyse DNA contaminants of virus/vector preparation from NGS data
turningA/data-science-live-book
An open source book to learn data science, data analysis and machine learning, suitable for all ages!
turningA/Duplex-Sequencing
turningA/gepard
Genome Pair Rapid Dotter
turningA/googleCharts
Google Charts bindings for the Shiny web framework for R
turningA/hdbscan
A high performance implementation of HDBSCAN clustering. http://hdbscan.readthedocs.io/en/latest/
turningA/OncoTree
turningA/pindel
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
turningA/piPipes
piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School
turningA/pyDNA
Collection of python 2.7 Utilities and Wrapper for DNA / NGS data manipulation
turningA/RADAR-seq
turningA/rmarkdown
Dynamic Documents for R
turningA/superNOVA
Precise Differential Coexpression Model Analysis Across Multiple Conditions
turningA/turningA.github.io
personal pages