tuttelikz/farabio

Error while installing using pip in kaggle

aymuos15 opened this issue · 2 comments

aymuos15 commented

Instructions To Reproduce the Bug

  1. What exact command you run:
!pip install farabio

Collecting farabio
Using cached farabio-0.0.3-py3-none-any.whl (45 kB)
Collecting albumentations==1.0.3 (from farabio)
Using cached albumentations-1.0.3-py3-none-any.whl (98 kB)
Collecting docutils==0.16 (from farabio)
Using cached docutils-0.16-py2.py3-none-any.whl (548 kB)
Collecting jupyterlab==3.1.6 (from farabio)
Using cached jupyterlab-3.1.6-py3-none-any.whl (8.6 MB)
Collecting matplotlib==3.4.3 (from farabio)
Using cached matplotlib-3.4.3.tar.gz (37.9 MB)
Preparing metadata (setup.py) ... error
error: subprocess-exited-with-error

× python setup.py egg_info did not run successfully.
│ exit code: 1
╰─> [55 lines of output]
Traceback (most recent call last):
File "/opt/conda/lib/python3.10/site-packages/pkg_resources/init.py", line 3031, in _dep_map
return self.__dep_map
File "/opt/conda/lib/python3.10/site-packages/pkg_resources/init.py", line 2828, in getattr
raise AttributeError(attr)
AttributeError: _DistInfoDistribution__dep_map

  During handling of the above exception, another exception occurred:
  
  Traceback (most recent call last):
    File "/opt/conda/lib/python3.10/site-packages/pkg_resources/__init__.py", line 3022, in _parsed_pkg_info
      return self._pkg_info
    File "/opt/conda/lib/python3.10/site-packages/pkg_resources/__init__.py", line 2828, in __getattr__
      raise AttributeError(attr)
  AttributeError: _pkg_info. Did you mean: 'egg_info'?
  
  During handling of the above exception, another exception occurred:
  
  Traceback (most recent call last):
    File "<string>", line 2, in <module>
    File "<pip-setuptools-caller>", line 34, in <module>
    File "/tmp/pip-install-q_o17q4m/matplotlib_92c8f5accd244278bcac3c74bd7998e1/setup.py", line 258, in <module>
      setup(  # Finally, pass this all along to distutils to do the heavy lifting.
    File "/opt/conda/lib/python3.10/site-packages/setuptools/__init__.py", line 152, in setup
      _install_setup_requires(attrs)
    File "/opt/conda/lib/python3.10/site-packages/setuptools/__init__.py", line 147, in _install_setup_requires
      dist.fetch_build_eggs(dist.setup_requires)
    File "/opt/conda/lib/python3.10/site-packages/setuptools/dist.py", line 812, in fetch_build_eggs
      resolved_dists = pkg_resources.working_set.resolve(
    File "/opt/conda/lib/python3.10/site-packages/pkg_resources/__init__.py", line 785, in resolve
      new_requirements = dist.requires(req.extras)[::-1]
    File "/opt/conda/lib/python3.10/site-packages/pkg_resources/__init__.py", line 2749, in requires
      dm = self._dep_map
    File "/opt/conda/lib/python3.10/site-packages/pkg_resources/__init__.py", line 3033, in _dep_map
      self.__dep_map = self._compute_dependencies()
    File "/opt/conda/lib/python3.10/site-packages/pkg_resources/__init__.py", line 3042, in _compute_dependencies
      for req in self._parsed_pkg_info.get_all('Requires-Dist') or []:
    File "/opt/conda/lib/python3.10/site-packages/pkg_resources/__init__.py", line 3024, in _parsed_pkg_info
      metadata = self.get_metadata(self.PKG_INFO)
    File "/opt/conda/lib/python3.10/site-packages/pkg_resources/__init__.py", line 1412, in get_metadata
      value = self._get(path)
    File "/opt/conda/lib/python3.10/site-packages/pkg_resources/__init__.py", line 1616, in _get
      with open(path, 'rb') as stream:
  FileNotFoundError: [Errno 2] No such file or directory: '/opt/conda/lib/python3.10/site-packages/numpy-1.25.0.dist-info/METADATA'
  
  Edit setup.cfg to change the build options; suppress output with --quiet.
  
  BUILDING MATPLOTLIB
    matplotlib: yes [3.4.3]
        python: yes [3.10.12 | packaged by conda-forge | (main, Jun 23 2023,
                    22:40:32) [GCC 12.3.0]]
      platform: yes [linux]
         tests: no  [skipping due to configuration]
        macosx: no  [Mac OS-X only]
  
  [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed

× Encountered error while generating package metadata.
╰─> See above for output.

note: This is an issue with the package mentioned above, not pip.
hint: See above for details.

  1. please simplify the steps as much as possible so they do not require additional resources to run, such as a private dataset.

To reproduce - simply run pip install farabio

Environment:

Provide your environment information using the following command:

Kaggle
tuttelikz commented

Hi, @aymuos15; sorry for late response. Farabio, unfortunately, is not supported within Kaggle notebook environment for now..

aymuos15 commented

No worries. Thank you for the update!

  • 👍1