tycheleturner
PhD Human Genetics & Molecular Biology
Washington University School of MedicineSt. Louis, Missouri
tycheleturner's Stars
gedeck/practical-statistics-for-data-scientists
Code repository for O'Reilly book
wangleiofficial/DSSPparser
DSSPparser is an easy tool to parse dssp file, and can transform PDB format file to dssp format file by xssp,also support the tansfrom between the PDB id and dssp format, hssp format and sequence.
plotly/plotly.py
The interactive graphing library for Python :sparkles: This project now includes Plotly Express!
fritzsedlazeck/SURVIVOR
Toolset for SV simulation, comparison and filtering
ENCODE-DCC/wgbs-pipeline
ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
ENCODE-DCC/rna-seq-pipeline
ENCODE-DCC/hic-pipeline
HiC uniform processing pipeline
ENCODE-DCC/atac-seq-pipeline
ENCODE ATAC-seq pipeline
chhylp123/hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
google-deepmind/alphafold
Open source code for AlphaFold.
google/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
PacificBiosciences/trgt
Tandem repeat genotyping and visualization from PacBio HiFi data
PacificBiosciences/pbmm2
A minimap2 frontend for PacBio native data formats
PacificBiosciences/IsoSeq
Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
PacificBiosciences/HiFiCNV
Copy number variant caller and depth visualization utility for PacBio HiFi reads
PacificBiosciences/pbsv
pbsv - PacBio structural variant (SV) calling and analysis tools
Rdatatable/data.table
R's data.table package extends data.frame:
tycheleturner/miscellaneous
tycheleturner/lab_meeting_bingo
Documents needed to create lab meeting bingo
tycheleturner/primer_design
tycheleturner/pacbio
tycheleturner/annotate_protein_domains
Using bedtools to annotate protein domains
tycheleturner/plot-protein-with-conservation
Plot Protein: Visualization of Mutations with Conservation
tycheleturner/plot-protein
Plot Protein: Visualization of Mutations
tycheleturner/illumina_genomes
tycheleturner/illumina_arrays
tycheleturner/pubmed_abstract_counter
Script to count number of abtracts for given query
tycheleturner/illumina_exome
tycheleturner/scholar.py
A parser for Google Scholar, written in Python
tycheleturner/CLUMP
CLUstering by Mutation Position