tyjo

Pinned Repositories

ABC-Discsim
Inference under a spatially-continuous coalescent model
Language:Python0 1 01
clv
Compositional Lotka-Volterra
Language:Python15 1 37
coptr
Accurate and robust inference of microbial growth dynamics from metagenomic sequencing
Language:Python16 2 135
dystruct
Inference of population structure from time-series genotype data
Language:C++13 2 103
dystruct-experiments
Supplementary code for experiments
Language:Shell0 1 11
GCM
Parameter estimation under a covarion nucleotide substitution model
Language:Python00
HipSTR
Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
Language:C0 1 00
luminate
Denoising longitudinal microbiome data.
Language:Python7 1 82
newick.py
Convert oriented tree format to newick
Language:Python0 1 01
wilcoxon-exact
Exact p-values for Wilcoxon signed-rank test in polynomial time.
Language:Python2 0 02

tyjo's Repositories

tyjo/coptr
Accurate and robust inference of microbial growth dynamics from metagenomic sequencing
Language:Python16 2 135
tyjo/clv
Compositional Lotka-Volterra
Language:Python15 1 37
tyjo/dystruct
Inference of population structure from time-series genotype data
Language:C++13 2 103
tyjo/luminate
Denoising longitudinal microbiome data.
Language:Python7 1 82
tyjo/wilcoxon-exact
Exact p-values for Wilcoxon signed-rank test in polynomial time.
Language:Python2 0 02
tyjo/ABC-Discsim
Inference under a spatially-continuous coalescent model
Language:Python0 1 01
tyjo/dystruct-experiments
Supplementary code for experiments
Language:Shell0 1 11
tyjo/GCM
Parameter estimation under a covarion nucleotide substitution model
Language:Python00
tyjo/HipSTR
Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
Language:C0 1 00
tyjo/newick.py
Convert oriented tree format to newick
Language:Python0 1 01
tyjo/zoom.plot
zoom.plot R package
Language:R0 0