Pinned Repositories
CellSort
CellSort scripts (published 2016)
DORA_XGB
Supervised learning classifiers to predict feasibility of enzymatic reactions
dynamic_cf_butanol_model
Publication code repository for the dynamic kinetic model of cell-free metabolism and butanol synthesis (https://doi.org/10.1016/j.ymben.2023.01.009)
MINE-2.0-Paper
All code used to generate results in MINE 2.0 paper
MINE-app
Web application for the MINE databases
MINE-Database
Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic
MINE-Server
RESTful API which serves as backend for tyo-nu/MINE-app
nextgen4b
A suite of tools to help analyze positional error rates in next-gen sequencing data
PolyIDRS_Paper
Code and Figures for the PolyIDRS paper.
SimAL
Active learning for selecting compounds for characterizing enzymes (published 2017)
Keith Tyo's laboratory at Northwestern University's Repositories
tyo-nu/MINE-Database
Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic
tyo-nu/MINE-Server
RESTful API which serves as backend for tyo-nu/MINE-app
tyo-nu/MINE-app
Web application for the MINE databases
tyo-nu/SimAL
Active learning for selecting compounds for characterizing enzymes (published 2017)
tyo-nu/CellSort
CellSort scripts (published 2016)
tyo-nu/dynamic_cf_butanol_model
Publication code repository for the dynamic kinetic model of cell-free metabolism and butanol synthesis (https://doi.org/10.1016/j.ymben.2023.01.009)
tyo-nu/MINE-2.0-Paper
All code used to generate results in MINE 2.0 paper
tyo-nu/nextgen4b
A suite of tools to help analyze positional error rates in next-gen sequencing data
tyo-nu/Cluster_Analysis_Tools
tyo-nu/DORA_XGB
Supervised learning classifiers to predict feasibility of enzymatic reactions
tyo-nu/PHA_Design
Repository containing resources for Polyhydroxyalkanoate design paper.
tyo-nu/pickaxe_paper
tyo-nu/PolyIDRS_Paper
Code and Figures for the PolyIDRS paper.
tyo-nu/SimScripts
SimIndex, SimZyme
tyo-nu/turtles
TURTLES: Time-sensitive Untemplated Recording using TdT for Local Environmental Signals
tyo-nu/c-auto-greene-2019
tyo-nu/em-accel
tyo-nu/ModelingDirectedEvolution
tyo-nu/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
tyo-nu/tdt-data-storage-paper
Repository for all code related to the TdT HEK cell data storage paper