A repository with details related to our hackathon including a list of projects, resources, and our goals.
View outcomes including any resulting preprints or publications from this hackathon.
Following the success of our previous UBRITE data science hackathons (2019, 2020, and 2021) organized by the UAB Informatics Institute, we are planning to run Hackin’ Omics virtually from August 5th to 6th in collaboration with the Center for Computational Genomics and Data Science (CGDS). We hope to encourage more UAB and non-UAB participants to take advantage of this opportunity to have fun by networking with peers in the scientific community and by participating on multidisciplinary teams to learn new skills and achieve goals for novel project proposals.
The theme for Hackin’ Omics is: multi-omics downstream analysis for discovery of novel translational findings and development of new tools using existing public datasets.
- Broaden the collaborative community at UAB and abroad by building teams of domain experts, scientists/researchers, and developers.
- Enable teams to achieve outcomes such as scripted pipelines, tutorials, tools, and novel omics analyses.
- Allow researchers to advance existing multi-omics projects and analyze their own datasets.
- Strengthen the professional development of participants by providing opportunities for training and networking.
- Create a GitHub account if you don't have one and update your registration information at https://airtable.com/shr3eEleXAe0ppYes.
- Log into slack using the link that was emailed to you. Introduce yourself in the
#generalchannel and find your team's channel. - Get to know your teammates and others by interacting in the
#music,#random, and#pet-photoschannels.
Attend pre-hackathon workshops or watch recordings to get up to speed.
- Information & Network Session: https://www.youtube.com/watch?v=Tt_khaR2VaM
- Computing Resources Workshop: https://www.youtube.com/watch?v=VRwqht_idMs
- U-BRITE Bootcamp: https://github.com/u-brite/u-brite-bootcamp
Please checkout this repository.
Please checkout this document.
| Team Name | Team Leader | GitHub Repository | Slack Channel |
|---|---|---|---|
| BiocSwirl | Almas Khan | #team1-biocswirl | |
| canAI | Tarun karthik kumar Mamidi | https://github.com/u-brite/canAI | #team2-canai |
| ImageNomeR (Image, Genome/Transcriptome Explorer) | Anton Orlichenko,Jack Freeman | https://github.com/u-brite/ImageNomeR | #team4-imagenomer |
| mCIRCrna | Shufan Zhang | #team5-mcircrna | |
| MedvAIsor | Rahul Sharma | https://github.com/u-brite/MedvAIsor | #team6-medvaisor |
| O-miner | Zongliang Yue | https://github.com/u-brite/o-miner | #team7-o-miner |
| Papaki | Vasileios Alevizos | https://github.com/u-brite/team_papaki | #team8-papaki |
| ReproCanAtlas | Emily Page | https://github.com/u-brite/ReproCanAtlas | #team9-reprocanatlas |
| sigSPLICE | Priyanka Gupta | https://github.com/u-brite/SigSPLICE | #team10-sigsplice |
| Single-Cell-reciter | Nilesh Kumar | #team11-single-cell-reciter | |
| SNVariome | Shaurita D. Hutchins | https://github.com/u-brite/SNVariome | #team12-snvariome |
| Team AD Guy | Pradeep Varathan Pugalenthi | https://github.com/u-brite/TeamADGuy | #team13-team-ad-guy |
| Team HeriVar | Akhil Pampana | https://github.com/u-brite/HeriVar | #team14-team-herivar |
| Team Vecna | Arun Boddapati | https://github.com/u-brite/TeamVecna-scDehasheR | #team15-team-vecna |
| Time | Event | Speaker(s) |
|---|---|---|
| 9 AM – 9:30 AM | Welcome and Introduction to Hackathon | Dr. Jake Chen & Tarun Mamidi |
| 9:30 AM – 10:00 AM | Speed Networking | Shaurita Hutchins |
| 10 AM – until | Teams will move to break-out rooms and work on their projects. Office hours will also start. | |
| 12:30 PM – 1:30 PM | Computational Genomics & Data Science Office Hours | Angelina Uno-Antonison |
| 2 PM – 3 PM | Computational Genomics & Data Science Office Hours | Dr. Mana Gajapathy |
| 5 PM | Teams check in with organizers & mentors to discuss progress | |
| 6 PM – until | Teams return to break out rooms to hack omics |
| Time | Event | Speaker(s) |
|---|---|---|
| 9 AM – 9:30 AM | Welcome back and check in on teams | Organizers |
| 9:30 AM – until | Teams will move to break-out rooms and work on their projects. | |
| 1 PM – 2 PM | Abstract Writing Workshop | Dr. Marla Hertz |
| 5 PM | Teams check in with organizers & mentors to discuss progress, showcase, & deadlines | Organizers |
| 6 PM – midnight | Teams work in breakout rooms until the deadline. |
Check out our website at http://hackathon.ubrite.org/.
Feel free to use the #HackinOmics22 hashtag on Twitter and tag @club_uab or @InformaticsUAB in your tweets!
Please use the discussions on this repository or visit the #help or #general channels on slack.