Pinned Repositories
AutoCD
Automated synthetic microbial Community Design
cneta
Copy Number Evolutionary Tree Analysis
experimentDB
Simple experimental data management
flopr
An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader data, and removing debris and doublets and calibration of flow cytometry data.
MIMIC
Modelling and Inference of MICrobiomes Project (MIMIC) is a Python package dedicated to simulate, model, and predict microbial communities interactions
RED
Reinforcment learning for Experimental Design
ROCC
ROCC: Reinforcement learning for the Optimisation of Co-Cultures
simulate_cell_growth
StabilityFinder
Main code area
wavelength2colour
Convert a numeric wavelength to an RGB or Hex colour
Computational Systems and Synthetic Biology, UCL's Repositories
ucl-cssb/AutoCD
Automated synthetic microbial Community Design
ucl-cssb/ROCC
ROCC: Reinforcement learning for the Optimisation of Co-Cultures
ucl-cssb/flopr
An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader data, and removing debris and doublets and calibration of flow cytometry data.
ucl-cssb/MIMIC
Modelling and Inference of MICrobiomes Project (MIMIC) is a Python package dedicated to simulate, model, and predict microbial communities interactions
ucl-cssb/cneta
Copy Number Evolutionary Tree Analysis
ucl-cssb/RED
Reinforcment learning for Experimental Design
ucl-cssb/wavelength2colour
Convert a numeric wavelength to an RGB or Hex colour
ucl-cssb/ABC-Flow
ucl-cssb/experimentDB
Simple experimental data management
ucl-cssb/simulate_cell_growth
ucl-cssb/StabilityFinder
Main code area
ucl-cssb/synbioweaver
ucl-cssb/ucl-cssb.github.io
ucl-cssb/CIN_CRC
ucl-cssb/CIN_PDO
ucl-cssb/CIN_SV
ucl-cssb/colony-com
Diffusion model of a system where sender strains produce AHL in the presence of arabinose. AHL diffuses and activates GFP production in receiver strains
ucl-cssb/DODL
DODL: digital optimisation of diffusible logic
ucl-cssb/Spatial-Computing
ucl-cssb/sv-model
A package that generates and models the evolution of structural variation in cancer genomes through multiple cell cycles, aimed at elucidating the mechanisms behind large scale error events such as chromothripsis.
ucl-cssb/WCM_plasmid_loss
ucl-cssb/worm_neural_nets