uclahs-cds/pipeline-Nextflow-module

Issues

• CRAM2BAM module

  #39 opened 6 months ago by yashpatel6
  0

• Expand indexFile function

  #37 opened 9 months ago by yashpatel6
  0

• Update broken Confluence links

  #33 opened a year ago by nwiltsie
  0

• Modularize a checksum generation process from PipeVal

  #30 opened a year ago by yashpatel6
  0

• Add functions from metapipeline and call-gSNP

  #27 opened 2 years ago by yashpatel6
  0

• Replace '_' with '-' in process log directory names

  #15 opened 3 years ago by aybeshlikyan
  1

• Replace docker hub with GH packages registry

  #25 opened 2 years ago by Faizal-Eeman
  0

• Modularize VCF index process (bgzip and tabix)

  #16 opened 2 years ago by maotian06
  0

• Potential update to string cleaning function

  #19 opened 2 years ago by yashpatel6
  0

• Accept -C option to create the csi file

  #21 opened 2 years ago by maotian06
  0

• Update index-VCF-file module docker image

  #20 opened 2 years ago by maotian06
  0

• Remove directories with `remove_intermediate_files`

  #13 opened 3 years ago by stefaneng
  0

• Add monitoring of disk usage before and after deletion

  #9 opened 3 years ago by yashpatel6
  0

• Make `-h` optional in intermediate file deletion

  #11 opened 3 years ago by yashpatel6
  0

• Add genome interval extraction module from call-gSNP

  #4 opened 3 years ago by yashpatel6
  0

• Module test cases

  #3 opened 3 years ago by yashpatel6
  0