Pinned Repositories
cohortMetaData
data cohort meta data displayed on xena cohort page; search by cohort tags
gitbookdocs
Documentation for our gitbook
kaplan-meier
Basic kaplan-meier methods in javascript
ucsc-xena-client
Functional genomics browser
ucsc-xena-server
Turn-key functional genomics data server.
wrangle
data_wrangling
xena-GDC-ETL
Extract, transform and load GDC data onto UCSC Xena
Xena_DE_Analysis_Pipeline
XenaGoWidget
Xena Gene Set Viewer (demo: http://xenademo.berkeleybop.io/xena)
xenaPython
Python API for Xena Hub
ucscXena's Repositories
ucscXena/ucsc-xena-client
Functional genomics browser
ucscXena/xenaPython
Python API for Xena Hub
ucscXena/xena-GDC-ETL
Extract, transform and load GDC data onto UCSC Xena
ucscXena/wrangle
data_wrangling
ucscXena/ucsc-xena-server
Turn-key functional genomics data server.
ucscXena/cohortMetaData
data cohort meta data displayed on xena cohort page; search by cohort tags
ucscXena/kaplan-meier
Basic kaplan-meier methods in javascript
ucscXena/gitbookdocs
Documentation for our gitbook
ucscXena/Xena_DE_Analysis_Pipeline
ucscXena/XenaGoWidget
Xena Gene Set Viewer (demo: http://xenademo.berkeleybop.io/xena)
ucscXena/client-template
react template for client-side development
ucscXena/ehmutable
js immutable helpers looking vaguely like clojure
ucscXena/ux-resource-for-ucsc-genomics-institute
ucscXena/xenaH5
python scripts for converting 10x genomics single cell RNAseq data to Xena dense matrix file
ucscXena/fast-deep-equal
The fastest deep equality check with Date and RegExp support
ucscXena/geneset-analysis-service
ucscXena/geotiff.js
geotiff.js is a small library to parse TIFF files for visualization or analysis. It is written in pure JavaScript, and is usable in both the browser and node.js applications.
ucscXena/probeMaps
ucscXena/tmpdownload
ucscXena/ucsc-xena-wasm
wasm methods for UCSC xena
ucscXena/ucscxena.github.io
Build a Jekyll blog in minutes, without touching the command line.
ucscXena/viv
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
ucscXena/xena-analysis-grails
ucscXena/Xena-GDC-auto-test
ucscXena/Xena-GDC-Detect_Missing_Datasets
This is testing script that checks for differences between data sets on the Xena hub and the GDC, providing the user with specific datasets that need updating.
ucscXena/xena-geneset-analysis-service
node API service that runs and caches analysis results for genesets
ucscXena/xena-web
landing page
ucscXena/xena_blitzGSEA_appyter
ucscXena/XenaAnalysisService
ucscXena/xenaConvert