Pinned Repositories
BuddingYeastHiC
Codes used for analysis in the following paper: "Form and function of topologically associating genomic domains in budding yeast."
CyclicLossEstimator
Using helper networks to estimate complicated loss functions
FIDDLE
Flexible Integration of Data with Deep LEarning
TSS_detection
Set of scripts useful for TSS detection and genome annotation
ueser's Repositories
ueser/FIDDLE
Flexible Integration of Data with Deep LEarning
ueser/TSS_detection
Set of scripts useful for TSS detection and genome annotation
ueser/CyclicLossEstimator
Using helper networks to estimate complicated loss functions
ueser/BuddingYeastHiC
Codes used for analysis in the following paper: "Form and function of topologically associating genomic domains in budding yeast."
ueser/aragorn
A Translator ARA combining asynchronous database querying, answer coalescence, and answer ranking.
ueser/awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
ueser/combiola
Computaional Biology and Learning Algorithms
ueser/deepchem
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
ueser/dgl
Python package built to ease deep learning on graph, on top of existing DL frameworks.
ueser/example-app-csv-wrangler
ueser/FastqAlignmentPipeline
Customized fastq alignment pipeline for Orchestra (Harvard Medical School's LSF based clusters)
ueser/flask-api-template
Simple template to build API's with Flask, Flask-RESTful and Flask-RESTful-Swagger
ueser/git
Git Source Code Mirror - This is a publish-only repository and all pull requests are ignored. Please follow Documentation/SubmittingPatches procedure for any of your improvements.
ueser/kg-project-name
ueser/netseq
Tools for NET-seq data analysis
ueser/notus-nextjs
Notus NextJS: Free Tailwind CSS UI Kit and Admin
ueser/PauseDetection
Detects the Pol2 pausing during transcriptional elongation
ueser/Play-the-list
Toy project that allows me to listen to custom playlists
ueser/pLogicNet
ueser/PPInetwork
Quick short analysis of Mass Spectrometry data
ueser/SVMalign
Trains an SVM with weakly annotated signal data and aligns them to improve annotation.
ueser/SymbolicDataAnalysis
An algorithm that presents a different way of analyzing genomic signals
ueser/Toolbox
small pieces of codes that I often use
ueser/transCSSR-master
A Python implementation of CSSR for epsilon-transducers.