Pinned Repositories
AURA-Net
cir4mics
Simulating structurally variable Nuclear Pore Complexes for Microscopy
imagequantification101
MorphoDynamicsPipe
A library that uses snakemake to run a morphodynamics analysis on images of cells or nuclei..
muMatch
Pipeline for putting surface meshes into correspondence
napari-splineit
Util to visualize and manipulate spline curves in Napari
nuclear_phenotyping
pyshot
A Python API for the SHOT descriptor
shapeanalysis101
A tutorial of classical shape analysis methods
splinedist
SplineDist: Automated Cell Segmentation with Spline Curves
Uhlmann Group @ EMBL-EBI's Repositories
uhlmanngroup/splinedist
SplineDist: Automated Cell Segmentation with Spline Curves
uhlmanngroup/muMatch
Pipeline for putting surface meshes into correspondence
uhlmanngroup/pyshot
A Python API for the SHOT descriptor
uhlmanngroup/shapeanalysis101
A tutorial of classical shape analysis methods
uhlmanngroup/AURA-Net
uhlmanngroup/napari-splineit
Util to visualize and manipulate spline curves in Napari
uhlmanngroup/imagequantification101
uhlmanngroup/cir4mics
Simulating structurally variable Nuclear Pore Complexes for Microscopy
uhlmanngroup/MorphoDynamicsPipe
A library that uses snakemake to run a morphodynamics analysis on images of cells or nuclei..
uhlmanngroup/nuclear_phenotyping
uhlmanngroup/napari-splinedist
uhlmanngroup/opt2mesh
Extract meshes from Optical Projective Tomography data
uhlmanngroup/bioimage_phenotyping
uhlmanngroup/Cestimii
Curvature Estimation using Integral Invariants
uhlmanngroup/spline-interpolation
uhlmanngroup/bioimage_embed
uhlmanngroup/cpnet
A Learning Based Formulation of Parametric Curve Fitting for Bioimage Analysis.
uhlmanngroup/middle-axis-estimations
uhlmanngroup/shape_embed
uhlmanngroup/SimulateNPCs
Simulate structurally variable Nuclear Pore Complexes
uhlmanngroup/soft-target-InfoNCE
Noise contrastive estimation with soft targets for conditional models
uhlmanngroup/ZeroCostDL4Mic
ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy