/peka-eclip

Download and prepare ENCODE eCLIP raw fastq for processing with the nf-core/clipseq pipeline

Primary LanguageNextflowGNU General Public License v3.0GPL-3.0

peka-eclip

This repository contains scripts to:

  • Download raw ENCODE eCLIP fastq files
  • Pre-process them to ensure they can be run through the nf-core/clipseq pipeline
  • Run them through the nf-core/clipseq pipeline