/deeptfactor

shared from https://bitbucket.org/kaistsystemsbiology/deeptfactor/src/master/

Primary LanguagePython

#DeepTFactor ##Procedure

Note: This source code was developed in Linux, and has been tested in Ubuntu 16.04 with Python 3.6.

  1. Clone the repository

     git clone https://bitbucket.org/kaistsystemsbiology/deeptfactor.git

  2. Create and activate virtual environment

     conda env create -f environment.yml
 conda activate deeptfactor

  3. To use GPU for the computation, install an appropriate version of pytorch (and cuda).

##Example

  • Run DeepTFactor

      python tf_running.py -i ./Dataset/example_tf.fasta -o ./result -g cpu
  python tf_running.py -i ./Dataset/example_tf.fasta -o ./result -g cuda:1