Suite of command-line tools to expedite analysis of exome variant data from multiple patients and multiple variant callers.
The official repository is at:
https://github.com/umich-brcf-bioinf/Jacquard
$ jacquard <subcommand> [options] [arguments]
Subcommands
| translate: | Creates new VCFs, adding a controlled vocabulary of new FORMAT tags. |
|---|---|
| merge: | Integrates a directory of VCFs into a single VCF. |
| summarize: | Adds new INFO fields and FORMAT tags that combine variant data from the merged VCF. |
| expand: | Explodes a VCF file into a tab-delimited file. |
For help on a specific subcommand:
$ jacquard <subcommand> --help
See ReadTheDocs for full documentation.
Email bfx-jacquard@umich.edu for support and questions.
UM BRCF Bioinformatics Core