/unique-peptide-finder

Primary LanguagePython

Unique Peptide Finder

This script queries the Unipept API and reports all tryptic peptides that are unique to a specific taxon.

image

Requirements

  • Python3 needs to be installed locally
  • tdqm module (do pip3 install tdqm if this is not yet installed)

Usage

Note: Make sure that you're running these commands from the root of this repository's folder.

python3 unique_peptides_taxon.py <NCBI_ID>

Example

> python3 unique_peptides_taxon.py 83333
AAGLATGNVSTAELQDATPAALEAHVTSR
LTTLSHTSEGHR
VANLEAQLAEAQTR
TVLTWTVLP
LIIFFIGTVFVLAALIPMQQVGVEK
IYDYIDIIIEDYENTK
GDFMNIFKPISYIASLAPR
VTNIWHGR
...