uniqueg
Hi. I'm a software engineer and bioinformatician working on lab automation.
Biozentrum, University of Basel & SIB Swiss Institute of Bioinformatics / ELIXIR SwitzerlandBasel, Switzerland
Pinned Repositories
cwl-WES
Trigger CWL workflows via GA4GH WES and TES
drs-filer
Lightweight, flexible Flask/Gunicorn-based GA4GH DRS implementation
foca
Opinionated Flask microservice archetype for quick OpenAPI-based microservice development
proTES
Proxy service for injecting middleware into GA4GH TES requests
TEStribute
Task distribution logic for use in proTES repo
trs-filer
Lightweight, flexible Flask/Gunicorn-based GA4GH TRS implementation
fair-rna
FAIR Tools in RNA Bioinformatics
uniqueg's Repositories
uniqueg/fair-rna
FAIR Tools in RNA Bioinformatics
uniqueg/biohackathon-projects-2024
Project code for BioHackathon Europe 2024.
uniqueg/connexion-flask-patch-for-foca
Testing how Flask and Connexion could be patched to allow type inferences for FOCA config.
uniqueg/cookiecutters
uniqueg/copilot-test
uniqueg/cwl-example-workflows
Example workflows written in CWL
uniqueg/cwl-tes
cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.
uniqueg/cwl-tes-temp
Temporary fork of unmerged, inaccessible pull request providing OAuth2 support; manually edited
uniqueg/cwltool
Common Workflow Language reference implementation
uniqueg/elixir-cloud-visualizations
uniqueg/git-management
Scripts & cookiecutters to interact with Git repository hosting services
uniqueg/gsoc-2017
A website that showcases interesting projects!
uniqueg/msa_group_compare
Workflow to compare two sequence groups by multiple sequence alignment and distance tree
uniqueg/RD_pipeline
CWL WES-TES
uniqueg/scripts
Kitchen sink of bioinformatics scripts
uniqueg/semantic-releases
Testing out config for using semantic releases
uniqueg/task-execution-schemas
uniqueg/TESK
GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes
uniqueg/test-git-flow
Testing Git flow with clean linear commit history based on a main, dev and feature branches
uniqueg/travis-ci-examples
Example Travis CI configs
uniqueg/V-pipe
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
uniqueg/wes-test-workflow-attachment
Verify that the workflow attachment parameter of a GA4GH WES implementation is functional
uniqueg/workflow-execution-service-schemas
The WES API is a standard way to run and manage portable workflows.