unswo

unswo's Stars

• MagpiePKU/EpiTrace

  Cell age determination by scATAC-seq and bulk-ATAC-seq

  Language:R251

• srush/GPU-Puzzles

  Solve puzzles. Learn CUDA.

  Language:Jupyter Notebook9.4k733

• gustaveroussy/sopa

  Technology-invariant pipeline for spatial omics analysis (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / ...) that scales to millions of cells

  Language:Python12314

• noperator/sol

  A de-minifier (formatter, exploder, beautifier) for shell one-liners

  Language:Go4495

• ckmah/bento-tools

  A Python toolkit for subcellular analysis of spatial transcriptomics data

  Language:Python676

• gpiozero/gpiozero

  A simple interface to GPIO devices with Raspberry Pi

  Language:Python1.9k304

• plger/scDblFinder

  Methods for detecting doublets in single-cell sequencing data

  Language:R15916

• kaizhang/SnapATAC2

  Single-cell epigenomics analysis tools

  Language:Python22224

• EperLuo/scDiffusion

  A model developed for the generation of scRNA-seq data

  Language:Jupyter Notebook314

• husonlab/splitstree6

  SplitsTree App

  Language:Java855

• rapidsai/cuvs

  cuVS - a library for vector search and clustering on the GPU

  Language:Cuda18162

• sunduanchen/Scissor

  Scissor package

  Language:C++17931

• wlandau/crew

  A distributed worker launcher

  Language:R1244

• ropensci/targets

  Function-oriented Make-like declarative workflows for R

  Language:R92273

• ropensci-books/targets

  User manual of the targets R pacakge

  2126

• MangiolaLaboratory/HPCell

  Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R

  Language:R134

• zed-industries/zed

  Code at the speed of thought – Zed is a high-performance, multiplayer code editor from the creators of Atom and Tree-sitter.

  Language:Rust48k2.8k

• bowang-lab/scGPT

  Language:Jupyter Notebook1k192

• theislab/graphcompass

  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems

  Language:Jupyter Notebook27

• GfellerLab/SuperCell

  Coarse-graining of large single-cell RNA-seq data into metacells

  Language:R6511

• welch-lab/MultiVelo

  Multi-omic velocity inference

  Language:Python10612

• brentp/cyvcf2

  cython + htslib == fast VCF and BCF processing

  Language:Cython37172

• guokai8/scGSVA

  scGSVA: Perform GSVA for single cell RNA seq

  Language:R453

• cole-trapnell-lab/garnett

  Automated cell type classification

  Language:R10425

• pachterlab/CGCCP_2023

  scVI extension for unspliced RNA

  Language:Jupyter Notebook161

• scverse/pertpy

  Perturbation Analysis in the scverse ecosystem.

  Language:Python13020

• Jiefei-Wang/gpuMagic

  An R interface to write OpenCL functions

  Language:R103

• powellgenomicslab/scPred

  scPred package for cell type prediction from scRNA-seq data

  Language:R7116

• facebookresearch/faiss

  A library for efficient similarity search and clustering of dense vectors.

  Language:C++30.8k3.6k

• debruine/quarto-glossary

  A lua extension that provides shortcodes for glossary in quarto.

  Language:Lua173