ursueugen
Computational and life scientist with a medical background. Always looking for new ways to combine disciplines and solve complex problems.
Bucharest, Romania
Pinned Repositories
airr-seq
Adaptive immune repertoire sequencing related code
biocontainers
Docker containers of Computational Biology of Aging Group
codon-distance
Crawl4Celllines
cross-species-linear-models
Cross-species linear models analysis of gene expression and pathways enrichment association with mammalian maximum lifespan (MLS) and other species traits.
gdrive-migration
Code for migrating contents of google drives.
grafana-monitoring
Monitor servers and docker
heavy-light-dependence
Investigates heavy and light chain structural similarities across structural antibodies datasets.
help2022-ukr-scrape
Substitution_Decision_Errors
ursueugen's Repositories
ursueugen/gdrive-migration
Code for migrating contents of google drives.
ursueugen/Substitution_Decision_Errors
ursueugen/airr-seq
Adaptive immune repertoire sequencing related code
ursueugen/codon-distance
ursueugen/Crawl4Celllines
ursueugen/cross-species-linear-models
Cross-species linear models analysis of gene expression and pathways enrichment association with mammalian maximum lifespan (MLS) and other species traits.
ursueugen/grafana-monitoring
Monitor servers and docker
ursueugen/heavy-light-dependence
Investigates heavy and light chain structural similarities across structural antibodies datasets.
ursueugen/help2022-ukr-scrape
ursueugen/htgaa2022
ursueugen/human-protein-atlas-analysis
ursueugen/immune_repertoires_db
ursueugen/immuneML
immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
ursueugen/interspecies_homology_converter
Script to get species' genes homology correspondence
ursueugen/MACS_model
Biophysical modelling of the MACS procedure
ursueugen/meth2expr
ursueugen/nrichgenes
Performs gene enrichment analysis, for personal use. A wrapper for gseapy: https://pypi.org/project/gseapy/
ursueugen/peptide_prot_csv2fasta_converter
Script for personal use to convert peptide sequences - protein id tabular files to .fasta
ursueugen/pooled-screening-simulation
Simulation of pooled screening efficiency.
ursueugen/pyUNO
Python UNO game for strategy analysis
ursueugen/rango
Tango with python project
ursueugen/rna-seq
bioinformatics pipelines
ursueugen/saab_plus_dockerized
Docker container for the SAAB+ pipeline: https://github.com/oxpig/saab_plus
ursueugen/scAgeCom
Analysis of the Dysregulation of Intercellular Communication with Age from scRNA-seq
ursueugen/scihub-mozilla-add-on
Mozilla add on for sci-hub.
ursueugen/shiny-golem-toy
ursueugen/SRC-GastricADK-MD-Thesis
Materials for graduation thesis from medical school.
ursueugen/synergy-prediction
ursueugen/TE_RNA-Seq_DGE
ursueugen/transcriptional-profiles_enrichment-analysis