trouble installing slab2

[Thomas-Ulrich]

Hi,

So I m trying to get slab 2.0 running on my desktop (on which Linux debian is running).

1. First trying to run 'slab2env.sh' I got an error when running the script because $_CONDA_ROOT was an empty string (within the script).
   I first tried changing source ~/.bash_profile against source ~/.bashrc but it did not help.
   the 2 last lines of my ~/.bashrc are:

. /export/data/ulrich/MyLibs/anaconda3/etc/profile.d/conda.sh
conda activate base

I finally came up a solution for that:
using '. /export/data/ulrich/MyLibs/anaconda3/etc/profile.d/conda.sh' instead of 'source ~/.bash_profile' in your script and the install script then runs.

2. let's first comment the 3 pip install. I then get this error:

ResolvePackageNotFound:

• gdal==2.1.3=py35_7
• bcrypt==3.1.4=py35h7e31480_0
• qt==5.6.2=h9e3eb04_4
• appnope==0.1.0=py35_0
• webencodings==0.5.1=py35_0

3. getting over this error, if I then uncomment the last 3 pip install, I get the following error:

creating /usr/local/lib/python2.7/dist-packages/impactutils
error: could not create '/usr/local/lib/python2.7/dist-packages/impactutils': Permission denied
Probably because I m not root. This is fixed by adding '--user' to the last pip.

So I m almost done, but 2) is not fixed.

Thx in advance,

Thomas.

[ghayes-usgs]

Hi Thomas, I'm working on this now - I think I just have to give you an updated slab2env.sh script... Cheers, Gavin

…

On Tue, Oct 23, 2018 at 8:25 AM Thomas-Ulrich ***@***.***> wrote: Hi, So I m trying to get slab 2.0 running on my desktop (on which Linux debian is running). 1. First trying to run 'slab2env.sh' I got an error when running the script because $_CONDA_ROOT was an empty string (within the script). I first tried changing source ~/.bash_profile against source ~/.bashrc but it did not help. the 2 last lines of my ~/.bashrc are: . /export/data/ulrich/MyLibs/anaconda3/etc/profile.d/conda.sh conda activate base I finally came up a solution for that: using '. /export/data/ulrich/MyLibs/anaconda3/etc/profile.d/conda.sh' instead of 'source ~/.bash_profile' in your script and the install script then runs. 1. let's first comment the 3 pip install. I then get this error: ResolvePackageNotFound: - gdal==2.1.3=py35_7 - bcrypt==3.1.4=py35h7e31480_0 - qt==5.6.2=h9e3eb04_4 - appnope==0.1.0=py35_0 - webencodings==0.5.1=py35_0 1. getting over this error, if I then uncomment the last 3 pip install, I get the following error: creating /usr/local/lib/python2.7/dist-packages/impactutils error: could not create '/usr/local/lib/python2.7/dist-packages/impactutils': Permission denied Probably because I m not root. This is fixed by adding '--user' to the last pip. So I m almost done, but 2) is not fixed. Thx in advance, Thomas. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#11>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AIEb1qK7LezODTxpI7qvZwKqWjaaXfS1ks5unyazgaJpZM4X1s6P> .

-- ----------------------- Gavin P Hayes Research Geophysicist USGS National Earthquake Information Center ghayes@usgs.gov 303-273-8421 ----------------------- Click here for the USGS Slab2 Database <https://www.sciencebase.gov/catalog/item/5aa1b00ee4b0b1c392e86467>

[ghayes-usgs]

The new slab2env environment should address all these issues.
Note some changes to s2d and s2d_fnctns as well.

[Thomas-Ulrich]

Hi,
every got installed properly except that i need to add '--user' to
'pip install git+git://github.com/usgs/earthquake-impact-utils.git'
Thx.
Thomas.