Pinned Repositories
annotation_guidelines
ards
A PyTorch Wrapper of Hierarchical Attention Network with Sentence Objectives Framework for ARDS Identification
CACER
Dataset and baseline experiments for the Clinical Concept Annotations for Cancer Events and Relations (CACER) dataset.
clinical-trials-gov-data
Criteria2Query
[In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed against OMOP CDM
ctbert
Clinical Trial Information Extraction with BERT (CT-BERT)
MIMIC-CXR_clinical_findings
This repo contains over 1 million medical problem findings and 31 K lesion findings extracted with our event extraction model.
mspert
PL_Marker_Plus
uwbionlp-parser
A container-based CLI for executing various NLP algorithms on documents, developed by @uw-bionlp.
UW Bio-NLP's Repositories
uw-bionlp/clinical-trials-gov-data
uw-bionlp/uwbionlp-parser
A container-based CLI for executing various NLP algorithms on documents, developed by @uw-bionlp.
uw-bionlp/annotation_guidelines
uw-bionlp/CACER
Dataset and baseline experiments for the Clinical Concept Annotations for Cancer Events and Relations (CACER) dataset.
uw-bionlp/ctbert
Clinical Trial Information Extraction with BERT (CT-BERT)
uw-bionlp/MIMIC-CXR_clinical_findings
This repo contains over 1 million medical problem findings and 31 K lesion findings extracted with our event extraction model.
uw-bionlp/ReportMatcher
uw-bionlp/ards
A PyTorch Wrapper of Hierarchical Attention Network with Sentence Objectives Framework for ARDS Identification
uw-bionlp/CAMIR
uw-bionlp/Criteria2Query
[In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed against OMOP CDM
uw-bionlp/mspert
uw-bionlp/PedSHAC
Dataset, annotation guideline and baseline experiments for the PedSHAC corpora.
uw-bionlp/PL_Marker_Plus
uw-bionlp/CliniQG4QA
CliniQG4QA: Generating Diverse Questions for Domain Adaptation of Clinical Question Answering
uw-bionlp/decaNLP
The Natural Language Decathlon: A Multitask Challenge for NLP
uw-bionlp/pytorch_graph-rel
A PyTorch implementation of GraphRel
uw-bionlp/R-BERT
Pytorch re-implementation of R-BERT model
uw-bionlp/sara
StAtutory Reasoning Assessment
uw-bionlp/assertion-classifier
uw-bionlp/clinical-trials-gov-annotation
uw-bionlp/leaf-corpora
uw-bionlp/philter-ucsf
Open source clinical text de-identification
uw-bionlp/philter-v2
UCSF Philter for UC
uw-bionlp/PINE
Collaborative NLP annotation tool supporting enterprise authentication, inter-annotator statistics, active learning
uw-bionlp/spert
PyTorch code for SpERT: Span-based Entity and Relation Transformer
uw-bionlp/TREQS
Text-to-SQL Generation for Question Answering on Electronic Medical Records