Molecular Information Systems Lab

UW MISL

Pinned Repositories

cupyck
cuda-accelerated multistranded partition function
Language:Cuda3 1 40
data-nbt17
Data for paper "Random Access in Large-Scale DNA Data Storage"
12 3 02
dna-nanopore-computing
Analysis pipeline for running DNA circuits on the nanopore
Language:Jupyter Notebook5 9 00
NanoporeTERs
Code repository for 2019 NanoporeTERs paper.
Language:Jupyter Notebook7 10 11
PASTOR-sequencing
Language:Jupyter Notebook5 6 20
Porcupine
Porcupine is a molecular tagging system to tag physical objects with DNA.
Language:Jupyter Notebook7 7 22
poretitioner
Language:Python3 2 771
primo-similarity-search
Code and models for the primo similarity search project
Language:Jupyter Notebook4 8 52
puddle
A system for high-level, reliable programming of microfluidic devices
Language:Rust37 9 2610
purpledrop
Newest iteration of PurpleDrop. Reimplemented in kicad5
15 5 71

Molecular Information Systems Lab's Repositories

uwmisl/purpledrop
Newest iteration of PurpleDrop. Reimplemented in kicad5
15 5 71
uwmisl/dna-nanopore-computing
Analysis pipeline for running DNA circuits on the nanopore
Language:Jupyter Notebook5 9 00
uwmisl/PASTOR-sequencing
Language:Jupyter Notebook5 6 20
uwmisl/primo-similarity-search
Code and models for the primo similarity search project
Language:Jupyter Notebook4 8 52
uwmisl/poretitioner
Language:Python3 2 771
uwmisl/storage-biasing-ncomms20
data and codes for Nature Communicates 2020. Title: Quantifying Molecular Bias in DNA Data Storage
Language:Jupyter Notebook3 9 01
uwmisl/combinatorial_primer_project
Language:Jupyter Notebook2 8 00
uwmisl/Deep-Molecules
Protein Sequence AutoEncoders
Language:Jupyter Notebook2 8 0
uwmisl/dmfwizard
Python library for designing digital microfluidic electrode boards with KiCad
Language:Python2 9 0
uwmisl/primo-openimages
VGG16-FC2 feature vectors for OpenImagesV4
Language:Jupyter Notebook2 10 50
uwmisl/hamiltonPSD
simple serial protocol wrapper for hamilton PSD pumps.
Language:Python1 2 0
uwmisl/PorTis
Code repository and replication package for PorTis paper
Language:Jupyter Notebook1 7 00
uwmisl/purpledrop-driver
Python driver and gateway for PurpleDrop USB devices
Language:Python1 8 0
uwmisl/purpledrop-software
Controller software for the PurpleDrop digital microfluidics platform
Language:Rust1 7 0
uwmisl/purpledrop-stm32
Embedded application to run on PurpleDrop STM32 controller
Language:C++1 3 0
uwmisl/syn_bio_vis
An interactive tool for teaching and learning molecular programming.
Language:JavaScript0 2 11
uwmisl/cas9-random-access
Random access of DNA data using Cas9 enrichment and nanopore sequencing
Language:Jupyter Notebook
uwmisl/cas9-similarity-search
DNA similarity search using Cas9
Language:Jupyter Notebook
uwmisl/electrode_board_template_100x74
KiCad project template for custom electrode boards
Language:HTML9 0
uwmisl/HIPified-DTWax
Language:C++
uwmisl/KinDA
Kinetic DNA strand displacement analyzer
Language:Python1 0
uwmisl/mach-nix
Create highly reproducible python environments
Language:Python1 0
uwmisl/pd-electrodeboard-pcb-v4
Language:Jupyter Notebook8 0
uwmisl/pd-electrodeboard-pcb-v6
Language:Python8 0
uwmisl/pd-electrodeboard-pcb-v7
Electrode Board Design for the PurpleDrop
Language:Python8 0
uwmisl/pd-frame-50x50
PCB frame for purpledrop electrode board with 50x50mm top plate
8 0
uwmisl/pd-frame-50x75
PCB frame for 50x75mm top plate on Purpledrop
1 0
uwmisl/pdclient
Python client for purple drop
Language:Python7 0
uwmisl/purpledrop-3dmodels
Repository of 3D printable tools and accessories for building and using PurpleDrop
8 0
uwmisl/purpledrop-manual
Source for generating the purpledrop manual
Language:Python9 0