Krauthammer Lab

University of Zurich & University Hospital Zurich

Zurich

Pinned Repositories

ARGON
Progressive Transformer-Based Generation of Radiology Reports
Language:Python25 2 142
auto-discern
Language:Python32
crispr
Language:CSS13 2 276
eustar_dgm4h
Language:Jupyter Notebook31
fragmentstein
Create a BAM file out of insensitive fragments data (i.e. FinaleDB frag.tsv.bgz file) including sequences extracted from a reference genome.
Language:Shell2 2 10
graphnn
Language:Jupyter Notebook30
PRIDICT
Prime editing guide RNA prediction
Language:Python7 3 65
PRIDICT2
Language:Python7 1 15
side-effects
Language:Python61
Tnpb
Language:Jupyter Notebook2 1 01

Krauthammer Lab's Repositories

uzh-dqbm-cmi/ARGON
Progressive Transformer-Based Generation of Radiology Reports
Language:Python25 2 142
uzh-dqbm-cmi/PRIDICT
Prime editing guide RNA prediction
Language:Python7 3 65
uzh-dqbm-cmi/PRIDICT2
Language:Python7 1 15
uzh-dqbm-cmi/auto-discern
Language:Python32
uzh-dqbm-cmi/eustar_dgm4h
Language:Jupyter Notebook31
uzh-dqbm-cmi/graphnn
Language:Jupyter Notebook30
uzh-dqbm-cmi/fragmentstein
Create a BAM file out of insensitive fragments data (i.e. FinaleDB frag.tsv.bgz file) including sequences extracted from a reference genome.
Language:Shell2 2 10
uzh-dqbm-cmi/Infusing_Prior
Official code implementation of the paper <Boosting Radiology Report Generation by Infusing Comparison Prior>
Language:Python2 1 10
uzh-dqbm-cmi/NFC_VIT
This is the implementation of the work described in the paper "Vision Transformer assisting rheumatologists in screening for capillaroscopy changes in systemic sclerosis: an artificial intelligence model"
Language:Python2 2 01
uzh-dqbm-cmi/Tnpb
Language:Jupyter Notebook2 1 01
uzh-dqbm-cmi/cfDNA-Flow
A modular bioinformatics pipeline offering a range of preprocessing options for cell-free DNA (cfDNA) analysis.
Language:HTML1
uzh-dqbm-cmi/drug-prescriptions
Supplementary Data for the "Drug prescription clusters in the UK Biobank" project
1
uzh-dqbm-cmi/hcup_research
Language:Python1
uzh-dqbm-cmi/lab-website
Language:TeX13
uzh-dqbm-cmi/SeqAlign
Language:Python12
uzh-dqbm-cmi/singularity_recipes
Singularity image with toolbox for scRNA-seq analysis including some useful R packages
Language:R11
uzh-dqbm-cmi/mridle
Resource Optimization for Radiology
Language:Python0 4 20
uzh-dqbm-cmi/cfDNA-Flow_paper
Language:R
uzh-dqbm-cmi/cfdna-radiooncology
The scripts used for the paper
Language:R
uzh-dqbm-cmi/clusty
CLI tools for launching / stopping batch jobs on HPC environments
Language:Python9 4
uzh-dqbm-cmi/cmi-website
Language:TeX1
uzh-dqbm-cmi/codes
Healthcare codes (e.g., ICD9, ICD10, ATC)
Language:Python2 0
uzh-dqbm-cmi/DQBM-retreat-workshop
Created for the DQBM Retreat 2022
Language:R
uzh-dqbm-cmi/eustar_mlhc
Semi-Supervised Generative Models for Disease Trajectories: A Case Study on Systemic Sclerosis
Language:Python
uzh-dqbm-cmi/fragmentstein-paper
Scripts to reproduce the analysis presented in the Fragmentstein paper.
Language:HTML
uzh-dqbm-cmi/FrEIA
Fragment End Integrated Analysis tool
Language:Python
uzh-dqbm-cmi/healing_mnist
Language:Jupyter Notebook
uzh-dqbm-cmi/scqm
Language:Python1 0
uzh-dqbm-cmi/scRNA-slow_frozen
scRNAseq scripts for the Live slow-frozen human tumor tissue paper
Language:R
uzh-dqbm-cmi/shendurelab-cfDNA
Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA
Language:Python