vHelmholtz

vHelmholtz's Stars

• WegraLee/deep-learning-from-scratch

  『밑바닥부터 시작하는 딥러닝』(한빛미디어, 2017)

  Language:Python1.2k1.2k

• satijalab/seurat-wrappers

  Community-provided extensions to Seurat

  Language:R307131

• ZJUFanLab/scCATCH

  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

  Language:R21938

• morris-lab/CellOracle

  This is the alpha version of the CellOracle package

  Language:Python31556

• hansenjn/MotiQ

  A set of ImageJ plugins to quantify dynamics, morphology, and fluorescence of microglial cells.

  Language:Java6

• dviraran/SingleR

  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)

  Language:HTML27598

• lmb-freiburg/Unet-Segmentation

  The U-Net Segmentation plugin for Fiji (ImageJ)

  Language:Java8725

• NikolayOskolkov/DeepLearningSingleCellBiology

  Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysis

  Language:HTML197

• theislab/single-cell-tutorial

  Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

  Language:Jupyter Notebook1.4k463

• hemberg-lab/scRNA.seq.course

  Analysis of single cell RNA-seq data course

  Language:TeX673360

• ucdavis-bioinformatics-training/2019-Fall-single-cell-RNA-sequencing-Workshop-UCSF

  2019 Fall single cell RNA sequencing Workshop @ UCSF

  Language:HTML32

• kstreet13/slingshot

  Functions for identifying and characterizing continuous developmental trajectories in single-cell data.

  Language:R27443

• broadinstitute/KrumlovSingleCellWorkshop2020

  Course Website

  Language:TeX86

• cole-trapnell-lab/monocle-release

  Language:R281116

• cole-trapnell-lab/monocle3

  Language:R348102

• scverse/scanpy

  Single-cell analysis in Python. Scales to >1M cells.

  Language:Python1.9k603

• jyyulab/NetBID

  Data-driven Network-based Bayesian Inference of Drivers

  Language:R409

• satijalab/seurat-data

  Dataset distribution for Seurat

  Language:R12948

• satijalab/seurat

  R toolkit for single cell genomics

  Language:R2.3k918