/scikit-bio-tutorials

Interactive tutorials for using scikit-bio in biological research

Primary LanguageJupyter NotebookBSD 3-Clause "New" or "Revised" LicenseBSD-3-Clause

scikit-bio-tutorials

Interactive tutorials for using scikit-bio in biological research.

This repository hosts tutorial materials for the ISMB 2024 conference.

The tutorial is broken down as follows, Google Colab notebooks can be launched via the following links

  1. Section 01: Basic bioinformatics using scikit-bio
  2. Section 02: Embeddings and Vectors with Scikit-Bio
  3. Section 03: Working with various omic data types
  4. Section 04: Analyzing microbial communities
  5. Section 05: Comparing microbial community structure
  6. Section 06: Inferring and associating critical features
  7. Section 07: Predicting host and environmental traits