valentynbez

valentynbez's Stars

• bacpop/PopPUNK

  PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

  Language:Python9320

• johnlees/seer

  sequence element (kmer) enrichment analysis

  Language:C++439

• amazon-science/RefChecker

  RefChecker provides automatic checking pipeline and benchmark dataset for detecting fine-grained hallucinations generated by Large Language Models.

  Language:Python30531

• jermp/essentials

  Essential C++ utilities.

  Language:C++157

• maybe-finance/maybe

  The OS for your personal finances

  Language:Ruby34.1k2.4k

• TencentARC/PhotoMaker

  PhotoMaker [CVPR 2024]

  Language:Jupyter Notebook9.6k768

• BioinformaticsToolsmith/Identity

  Language:C++333

• jhhung/kISS

  Language:C++3

• iskandr/deep-learning-for-bio

  Deep Learning for Biology

  4

• schneebergerlab/syri

  Synteny and Rearrangement Identifier

  Language:Cython34537

• gbouras13/coatofarms

  ONT Long-read 16S Snakemake pipeline using Emu

  Language:Python41

• psf/requests

  A simple, yet elegant, HTTP library.

  Language:Python52.2k9.3k

• huggingface/transformers

  🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

  Language:Python136k27.1k

• theislab/ehrapy

  Electronic Health Record Analysis with Python.

  Language:Python23619

• rrwick/Bandage

  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

  Language:C++59098

• som-shahlab/ehrshot-benchmark

  A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)

  Language:Jupyter Notebook14010

• OATML/EVE

  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.

  Language:Python6054

• TurtleTools/geometricus

  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.

  Language:Jupyter Notebook3811

• dptech-corp/Uni-Fold

  An open-source platform for developing protein models beyond AlphaFold.

  Language:Python38074

• Zuricho/ParallelFold

  Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures

  Language:Python14745

• JudeWells/chainsaw

  Language:Python292

• argmin-rs/argmin

  Numerical optimization in pure Rust

  Language:Rust1k80

• SkunkworksAI/BakLLaVA

  Language:Python70246

• Luthey-Schulten-Lab/Lattice_Microbes

  Language:HTML325

• lhatsk/AlphaLink

  AlphaLink: Integrating crosslinking MS data into OpenFold

  Language:Python6417

• guydurant/toolboxsf

  Language:Python9

• maabuu/posebusters

  Plausibility checks for generated molecule poses.

  Language:Python22514

• KosinskiLab/AlphaPulldown

  Language:Python21949

• linexjlin/GPTs

  leaked prompts of GPTs

  28.8k3.9k

• telatin/gan

  📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria

  Language:Python356