valentynbez
MD, PhD student in Bioinformatics. Studying massive genomic datasets and producing software to do it better.
Sunagawa Lab @ ETH ZürichZürich, Switzerland
valentynbez's Stars
exaloop/codon
A high-performance, zero-overhead, extensible Python compiler using LLVM
KindXiaoming/pykan
Kolmogorov Arnold Networks
microsoft/onnxruntime
ONNX Runtime: cross-platform, high performance ML inferencing and training accelerator
facebookresearch/xformers
Hackable and optimized Transformers building blocks, supporting a composable construction.
kyegomez/tree-of-thoughts
Plug in and Play Implementation of Tree of Thoughts: Deliberate Problem Solving with Large Language Models that Elevates Model Reasoning by atleast 70%
Blealtan/efficient-kan
An efficient pure-PyTorch implementation of Kolmogorov-Arnold Network (KAN).
facebookincubator/cinder
Cinder is Meta's internal performance-oriented production version of CPython.
ridgerchu/matmulfreellm
Implementation for MatMul-free LM.
nextflow-io/nextflow
A DSL for data-driven computational pipelines
open-mpi/ompi
Open MPI main development repository
lcompilers/lpython
Python compiler
pavlin-policar/openTSNE
Extensible, parallel implementations of t-SNE
TutteInstitute/datamapplot
Creating beautiful plots of data maps
GistNoesis/FourierKAN
binpash/pash
PaSh: Light-touch Data-Parallel Shell Processing
rsmpi/rsmpi
MPI bindings for Rust
WillHua127/GraphKAN-Graph-Kolmogorov-Arnold-Networks
apcamargo/genomad
geNomad: Identification of mobile genetic elements
rcedgar/usearch12
Open-source usearch
smithlabcode/falco
A C++ drop-in replacement of FastQC to assess the quality of sequence read data
gbouras13/phold
Phage Annotation using Protein Structures
TattaBio/gLM2
rcedgar/reseek
Protein structure alignment and search algorithm
prescient-design/lobster
Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation
jvkersch/tmtools
Python bindings for the TM-align algorithm and code for protein structure comparison developed by Zhang et al.
robbmcleod/cpufeature
Python module for detection of CPU features
althonos/pyrodigal-gv
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
labstructbioinf/rossmann-toolbox
Prediction and re-engineering of the cofactor specificity of Rossmann-fold proteins
althonos/scoring-matrices
Dependency free, Cython-compatible scoring matrices to use with biological sequences.
althonos/pyswrd
Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a heuristic method for fast database search.