Pinned Repositories
fastStructure
A variational framework for inferring population structure from SNP genotype data.
JournalAnalysis
A repository for exploring journals that we would like to publish under.
mgap
MicrobiomeR
A comprehensive and customizable R package for microbiome analysis.
MicrobiomeR-JOSS
This repository hosts our JOSS journal article for the MicrobiomeR package.
nprc-project-reports
protocols
A repository for the protocols and guides used in Dr. Eric Vallender's lab.
semver.org
Semantic Versioning spec and website
vallender-pkgdown-theme
A css theme for Vallender Lab pkgdown documentation.
vcf_to_dataframe
Get a pandas DataFrame from a possibly gzipped VCF file.
Vallender Lab's Repositories
vallenderlab/MicrobiomeR
A comprehensive and customizable R package for microbiome analysis.
vallenderlab/JournalAnalysis
A repository for exploring journals that we would like to publish under.
vallenderlab/vallender-pkgdown-theme
A css theme for Vallender Lab pkgdown documentation.
vallenderlab/fastStructure
A variational framework for inferring population structure from SNP genotype data.
vallenderlab/mgap
vallenderlab/MicrobiomeR-JOSS
This repository hosts our JOSS journal article for the MicrobiomeR package.
vallenderlab/nprc-project-reports
vallenderlab/protocols
A repository for the protocols and guides used in Dr. Eric Vallender's lab.
vallenderlab/rnaseq-tuxedo-suite
An RNASeq snakemake workflow using the Tuxedo suite.
vallenderlab/semver.org
Semantic Versioning spec and website
vallenderlab/test-repo
vallenderlab/vcf_to_dataframe
Get a pandas DataFrame from a possibly gzipped VCF file.
vallenderlab/workflowr-tutorial
vallenderlab/cookiecutter-snakemake-workflow
A cookiecutter for snakemake workflows.
vallenderlab/dnaseq-gatk-variant-calling
A DNA sequencing pipeline based on the GATK best-practices workflow.
vallenderlab/metadata-templates
vallenderlab/onboarding
Helpful documents and resources to get started in the Vallender Lab.
vallenderlab/snakemake-tutorial
vallenderlab/vallenderlab.github.io
This is the software website for the Vallender Lab.