Error when adding 'gene' feature to 50k feature and running 'Filter, Normalize & Reduce'
Pacomito opened this issue · 0 comments
Pacomito commented
3 Samples in 50k :
T_460684H_H3K27me3_50000
SA_AD1766_H3K27me3_50000
SA_AG5988_H3K27me3_50000
Samples are sparse matrices & have same names for 50kbp and feature
Adding the gene features worked fine but the bug occured when clicking on 'Filter, Normalize & Reduce' with the features 'gene' selected (fitering only features).
Warning: Error in $<-.data.frame: replacement has 1016 rows, data has 1771
86: stop
85: $<-.data.frame
83: num_cell_after_QC_filt_scExp
82: output$num_cell_after_QC_filt [/home/pprompsy/R/x86_64-pc-linux-gnu-library/4.1/ChromSCape/server.R#946]
2: shiny::runApp
1: launchApp
[1] "Data loading..."
Running on alternative experiment :gene
Timing stopped at: 0.004 0 0.004
Warning: Error in h: error in evaluating the argument 'x' in selecting a method for function 'print': ChromSCape::create_scExp - datamatrix and annot should containthe same number of cells
2: shiny::runApp