van Dijk Lab

BrainLM

cell2sentence

Cell2Sentence: Teaching Large Language Models the Language of Biology

cell2sentence-ft

Cell2Sentence turns scRNA-seq data into text for LLM training.

CINEMA-OT

CPSC482

CST

Continuous Spatiotemporal Transformer

encoding_wasserstein_metrics

Using set encoders to encode Wasserstein Spaces

HBEC_SARS-CoV-2_scRNA-seq

Supplementary data for "Single-cell longitudinal analysis of SARS-CoV-2 infection in human bronchial epithelial cells"

scGAT

Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attention Networks" to appear in ACM Proceedings. <https://arxiv.org/abs/2002.07128>

single-cell_neurodegeneration

Code for Tejwani L* & Ravindra NG* et al. 2020

vandijklab/BrainLM

vandijklab/cell2sentence-ft

Cell2Sentence turns scRNA-seq data into text for LLM training.

vandijklab/cell2sentence

Cell2Sentence: Teaching Large Language Models the Language of Biology

vandijklab/CINEMA-OT

vandijklab/CST

Continuous Spatiotemporal Transformer

vandijklab/scGAT

Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attention Networks" to appear in ACM Proceedings. <https://arxiv.org/abs/2002.07128>

vandijklab/HBEC_SARS-CoV-2_scRNA-seq

Supplementary data for "Single-cell longitudinal analysis of SARS-CoV-2 infection in human bronchial epithelial cells"

vandijklab/single-cell_neurodegeneration

Code for Tejwani L* & Ravindra NG* et al. 2020

vandijklab/CPSC482

vandijklab/encoding_wasserstein_metrics

Using set encoders to encode Wasserstein Spaces

vandijklab/self-supervsed_edge_feats

code for "Self-supervised edge features for improved Graph Neural Network training", <arxivlink>